{ "type": "genome", "identifier": "GCA_026169655.1", "organism": "Prevotella copri", "title": "Prevotella copri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AnimalBiome", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026169655.1", "bioproject": "PRJNA893230", "biosample": "SAMN31537021", "wgs_master": "JAPFER000000000.1", "refseq_category": "na", "taxid": "165179", "species_taxid": "165179", "organism_name": "Prevotella copri", "infraspecific_name": "", "isolate": "bin_4_LilbubCat", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/14", "asm_name": "ASM2616965v1", "submitter": "AnimalBiome", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/169/655/GCA_026169655.1_ASM2616965v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-14", "dateModified": "2022-11-14", "datePublished": "2022-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella copri" ], "sample_taxid": [ "165179" ], "sample_host_organism": [ "Felis catus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: CA" ], "sample_host_location_id": [], "data_size": "1.007 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3514982", "Number of Sequences": "124", "Longest Sequences (bp)": "205415", "N50 (bp)": "52871", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "2799", "Average Protein Length": "356.4", "Coding Ratio (%)": "85.1", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 96.2528, "matched_fragments": 788, "total_fragments": 1109, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 96.0955, "matched_fragments": 810, "total_fragments": 1109, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": 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"below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 77.9953, "matched_fragments": 85, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella herbatica", "strain": "strain=WR041", "accession": "GCA_017347605.1", "taxid": 2801997, "species_taxid": 2801997, "relation_to_type": "type", "validated": true, "ani": 77.9884, "matched_fragments": 96, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 77.5556, "matched_fragments": 98, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", 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