{
    "type": "genome",
    "identifier": "GCA_026193435.1",
    "organism": "Chlorobium sp.",
    "title": "Chlorobium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeastern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026193435.1",
        "bioproject": "PRJNA896156",
        "biosample": "SAMN31562350",
        "wgs_master": "JAPHUN000000000.1",
        "refseq_category": "na",
        "taxid": "1095",
        "species_taxid": "1095",
        "organism_name": "Chlorobium sp.",
        "infraspecific_name": "",
        "isolate": "S3D-Bin_4",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/15",
        "asm_name": "ASM2619343v1",
        "submitter": "Northeastern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/193/435/GCA_026193435.1_ASM2619343v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-15",
    "dateModified": "2022-11-15",
    "datePublished": "2022-11-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlorobium sp."
        ],
        "sample_taxid": [
            "1095"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: West Creek Plum Island Estuary"
        ],
        "sample_host_location_id": [],
        "data_size": "0.542 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1877639",
        "Number of Sequences": "351",
        "Longest Sequences (bp)": "26702",
        "N50 (bp)": "6322",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.1",
        "Number of CDSs": "1450",
        "Average Protein Length": "293.9",
        "Coding Ratio (%)": "68.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prosthecochloris marina",
                "strain": "strain=V1",
                "accession": "GCA_003182595.1",
                "taxid": 2017681,
                "species_taxid": 2017681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3612,
                "matched_fragments": 142,
                "total_fragments": 428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecochloris aestuarii",
                "strain": "strain=DSM 271",
                "accession": "GCA_000020625.1",
                "taxid": 1102,
                "species_taxid": 1102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1145,
                "matched_fragments": 83,
                "total_fragments": 428,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000020545.1",
                "gtdb_species": "s__Chlorobium_A phaeobacteroides_A",
                "ani": 95.0631,
                "matched_fragments": 405,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004028745.1",
                "gtdb_species": "s__Chlorobium_A sp004028745",
                "ani": 77.7973,
                "matched_fragments": 152,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015482705.2",
                "gtdb_species": "s__Chlorobium_A sp015482705",
                "ani": 77.6596,
                "matched_fragments": 121,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003182595.1",
                "gtdb_species": "s__Chlorobium_A marina",
                "ani": 77.3612,
                "matched_fragments": 142,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000020625.1",
                "gtdb_species": "s__Prosthecochloris aestuarii",
                "ani": 77.1449,
                "matched_fragments": 82,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Prosthecochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002240205.1",
                "gtdb_species": "s__Chlorobium_A sp002240205",
                "ani": 76.9862,
                "matched_fragments": 73,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003344365.2",
                "gtdb_species": "s__Prosthecochloris ethylica",
                "ani": 76.9323,
                "matched_fragments": 62,
                "total_fragments": 428,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Prosthecochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.022,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 30.25,
        "optimum_ph": 6.7,
        "genome_size": 2521899.725,
        "gc_content": 50.762,
        "coding_genes": 2256.166,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 46.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.5,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium_A",
        "s__Chlorobium_A sp026193435"
    ],
    "_genome_taxon": [
        "Chlorobium",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium_A",
        "s__Chlorobium_A sp026193435",
        "Bacteria",
        "Bacteroidota",
        "Chlorobiia",
        "Chlorobiales",
        "Chlorobiaceae",
        "Chlorobium",
        "A",
        "Chlorobium",
        "A",
        "sp026193435"
    ],
    "_meo": [
        {
            "id": "MEO_0000671",
            "label": "salt marsh"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}