{ "type": "genome", "identifier": "GCA_026193705.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026193705.1", "bioproject": "PRJNA896156", "biosample": "SAMN31562284", "wgs_master": "JAPHRZ000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "N3D-Bin_14", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/15", "asm_name": "ASM2619370v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/193/705/GCA_026193705.1_ASM2619370v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-15", "dateModified": "2022-11-15", "datePublished": "2022-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: West Creek Plum Island Estuary" ], "sample_host_location_id": [], "data_size": "0.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 51.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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"matched_fragments": 72, "total_fragments": 209, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 51.58, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003932505.1", "gtdb_species": "s__Thiohalobacter thiocyanaticus", "ani": 79.1568, "matched_fragments": 78, "total_fragments": 209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiohalobacterales;f__Thiohalobacteraceae;g__Thiohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002356355.1", "gtdb_species": "s__Thiohalobacter thiocyanaticus_A", "ani": 78.7975, "matched_fragments": 83, "total_fragments": 209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiohalobacterales;f__Thiohalobacteraceae;g__Thiohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015494295.1", "gtdb_species": "s__Thiogranum sp015494295", "ani": 78.3044, "matched_fragments": 75, "total_fragments": 209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DSM-19610;f__DSM-19610;g__Thiogranum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014762505.1", "gtdb_species": "s__SpSt-1174 sp014762505", "ani": 78.1538, "matched_fragments": 62, "total_fragments": 209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SpSt-1174;f__SpSt-1174;g__SpSt-1174", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__DSM-19610", "f__DSM-19610", "g__JAIVHA01", "s__JAIVHA01 sp026197075" ], "_genome_taxon": [ "Gammaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__DSM-19610", "f__DSM-19610", "g__JAIVHA01", "s__JAIVHA01 sp026197075", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "DSM-19610", "DSM-19610", "JAIVHA01", "JAIVHA01", "sp026197075" ], "_meo": [ { "id": "MEO_0000671", "label": "salt marsh" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }