{ "type": "genome", "identifier": "GCA_026197035.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026197035.1", "bioproject": "PRJNA896156", "biosample": "SAMN31562323", "wgs_master": "JAPHTM000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "N1M-Bin_4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/15", "asm_name": "ASM2619703v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/197/035/GCA_026197035.1_ASM2619703v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-15", "dateModified": "2022-11-15", "datePublished": "2022-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: West Creek Plum Island Estuary" ], "sample_host_location_id": [], "data_size": "0.775 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2721752", "Number of Sequences": "93", "Longest Sequences (bp)": "156363", "N50 (bp)": "48358", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "2564", "Average Protein Length": "309.1", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 78.1437, "matched_fragments": 280, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalomonas denitrificans", "strain": "strain=HLD2", "accession": "GCA_900102855.1", "taxid": 415747, "species_taxid": 415747, "relation_to_type": "type", "validated": true, "ani": 77.3681, "matched_fragments": 184, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus 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"GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 77.0107, "matched_fragments": 91, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 76.9496, "matched_fragments": 125, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ectothiorhodospira magna", "strain": "strain=B7-7", "accession": "GCA_900110965.1", "taxid": 867345, "species_taxid": 867345, "relation_to_type": "type", "validated": true, "ani": 76.7761, "matched_fragments": 83, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 76.7445, "matched_fragments": 100, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 76.6807, "matched_fragments": 121, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 76.5947, "matched_fragments": 143, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": 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