{ "type": "genome", "identifier": "GCA_026224835.1", "organism": "Mucilaginibacter xinganensis", "title": "Mucilaginibacter xinganensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Next generation Ecosystem Experiment Arctic", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026224835.1", "bioproject": "PRJNA830531", "biosample": "SAMN27732592", "wgs_master": "JAMFRM000000000.1", "refseq_category": "na", "taxid": "1234841", "species_taxid": "1234841", "organism_name": "Mucilaginibacter xinganensis", "infraspecific_name": "", "isolate": "NGEE_A_bin9", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/17", "asm_name": "ASM2622483v1", "submitter": "Next generation Ecosystem Experiment Arctic", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/224/835/GCA_026224835.1_ASM2622483v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-17", "dateModified": "2022-11-17", "datePublished": "2022-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter xinganensis" ], "sample_taxid": [ "1234841" ], "sample_host_organism": [ "Alnus alnobetula subsp. fruticosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Alaska, Seward Peninsula" ], "sample_host_location_id": [], "data_size": "1.885 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6609212", "Number of Sequences": "251", "Longest Sequences (bp)": "217280", "N50 (bp)": "45473", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "5297", "Average Protein Length": "352.9", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 91.8212, "matched_fragments": 1523, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter frigoritolerans", "strain": "strain=ATCC BAA-1854", "accession": "GCA_007830615.1", "taxid": 652788, "species_taxid": 652788, "relation_to_type": "type", "validated": true, "ani": 78.111, "matched_fragments": 415, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.3559, "matched_fragments": 393, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.3299, "matched_fragments": 356, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.3066, "matched_fragments": 357, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 77.3043, "matched_fragments": 369, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.1967, "matched_fragments": 282, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0678, "matched_fragments": 334, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 76.9949, "matched_fragments": 290, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.9519, "matched_fragments": 293, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.8969, "matched_fragments": 306, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 76.8939, "matched_fragments": 205, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.8466, "matched_fragments": 308, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.8312, "matched_fragments": 255, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 76.6655, "matched_fragments": 236, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 76.6546, "matched_fragments": 212, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, "relation_to_type": "type", "validated": true, "ani": 76.6492, "matched_fragments": 217, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 76.6042, "matched_fragments": 189, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorans", "strain": "strain=Gsoil 3017", "accession": "GCA_007971025.1", "taxid": 398053, "species_taxid": 398053, "relation_to_type": "type", "validated": true, "ani": 76.2559, "matched_fragments": 206, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014200495.1", "gtdb_species": "s__Mucilaginibacter sp014200495", "ani": 97.9801, "matched_fragments": 1710, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900105165.1", "gtdb_species": "s__Mucilaginibacter mallensis", "ani": 91.8099, "matched_fragments": 1524, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765905.1", "gtdb_species": "s__Mucilaginibacter sp009765905", "ani": 79.68, "matched_fragments": 707, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013287375.1", "gtdb_species": "s__Mucilaginibacter sp013287375", "ani": 79.1852, "matched_fragments": 380, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.44", "mean_intra_species_af": "0.60", "min_intra_species_af": "0.60", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013408825.1", "gtdb_species": "s__Mucilaginibacter sp013408825", "ani": 78.7258, "matched_fragments": 492, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007971025.1", "gtdb_species": "s__Mucilaginibacter ginsenosidivorans", "ani": 76.2407, "matched_fragments": 209, "total_fragments": 2069, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.382, "cell_length": 0.217, "doubling_h": null, "growth_tmp": 25.111, "optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Sphingobacteriales", "f__Sphingobacteriaceae", "g__Mucilaginibacter", "s__Mucilaginibacter sp014200495" ], "_genome_taxon": [ "Mucilaginibacter", "xinganensis", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Sphingobacteriales", "f__Sphingobacteriaceae", "g__Mucilaginibacter", "s__Mucilaginibacter sp014200495", "Bacteria", "Bacteroidota", "Bacteroidia", "Sphingobacteriales", "Sphingobacteriaceae", "Mucilaginibacter", "Mucilaginibacter", "sp014200495" ], "_meo": [ { "id": "MEO_0000147", "label": "root nodule" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }