{ "type": "genome", "identifier": "GCA_026225115.1", "organism": "Rhodovastum atsumiense", "title": "Rhodovastum atsumiense", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Next generation Ecosystem Experiment Arctic", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026225115.1", "bioproject": "PRJNA830531", "biosample": "SAMN27732609", "wgs_master": "JAMFSE000000000.1", "refseq_category": "na", "taxid": "504468", "species_taxid": "504468", "organism_name": "Rhodovastum atsumiense", "infraspecific_name": "", "isolate": "NGEE_A_bin33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/17", "asm_name": "ASM2622511v1", "submitter": "Next generation Ecosystem Experiment Arctic", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/225/115/GCA_026225115.1_ASM2622511v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-17", "dateModified": "2022-11-17", "datePublished": "2022-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodovastum atsumiense" ], "sample_taxid": [ "504468" ], "sample_host_organism": [ "Alnus alnobetula subsp. fruticosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Alaska, Seward Peninsula" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.76, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3666875", "Number of Sequences": "149", "Longest Sequences (bp)": "99798", "N50 (bp)": "43003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.9", "Number of CDSs": "3389", "Average Protein Length": "315.3", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidocella facilis", "strain": "strain=ATCC 35904", "accession": "GCA_000687875.1", "taxid": 525, "species_taxid": 525, "relation_to_type": "type", "validated": true, "ani": 77.8296, "matched_fragments": 290, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella aromatica", "strain": "strain=DSM 27026", "accession": "GCA_014201825.1", "taxid": 1303579, "species_taxid": 1303579, "relation_to_type": "type", "validated": true, "ani": 77.5684, "matched_fragments": 251, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.9082, "matched_fragments": 186, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 76.8381, "matched_fragments": 191, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 76.6784, "matched_fragments": 211, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidocella aminolytica", "strain": "strain=DSM 11237", "accession": "GCA_900129125.1", "taxid": 33998, "species_taxid": 33998, "relation_to_type": "type", "validated": true, "ani": 76.5206, "matched_fragments": 176, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma cellulosilyticum", "strain": "strain=HW T5.17", "accession": "GCA_020621385.1", "taxid": 2802395, "species_taxid": 2802395, "relation_to_type": "type", "validated": true, "ani": 76.421, "matched_fragments": 152, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisoma silvae", "strain": "strain=HW T2.11", "accession": "GCA_020618775.1", "taxid": 2802396, "species_taxid": 2802396, "relation_to_type": "type", "validated": true, "ani": 76.4193, "matched_fragments": 153, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidibrevibacterium fodinaquatile", "strain": "strain=G45-3", "accession": "GCA_003352165.1", "taxid": 1969806, "species_taxid": 1969806, "relation_to_type": "type", "validated": true, "ani": 76.2309, "matched_fragments": 135, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 76.1814, "matched_fragments": 168, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.1346, "matched_fragments": 180, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.1303, "matched_fragments": 194, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.1133, "matched_fragments": 181, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 75.9484, "matched_fragments": 180, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 75.9028, "matched_fragments": 160, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 75.8151, "matched_fragments": 140, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 75.8142, "matched_fragments": 137, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 75.7522, "matched_fragments": 78, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerilata", "strain": "strain=DSM 19363", "accession": "GCA_000711725.1", "taxid": 452982, "species_taxid": 452982, "relation_to_type": "type", "validated": true, "ani": 75.7422, "matched_fragments": 107, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 75.6596, "matched_fragments": 152, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerophila", "strain": "strain=NBRC 108923", "accession": "GCA_014490485.1", "taxid": 1224513, "species_taxid": 1224513, "relation_to_type": "type", "validated": true, "ani": 75.6488, "matched_fragments": 155, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 75.2836, "matched_fragments": 73, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.76, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003164135.1", "gtdb_species": "s__Acidocella sp003164135", "ani": 78.0572, "matched_fragments": 294, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.73", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000687875.1", "gtdb_species": "s__Acidocella facilis", "ani": 77.8296, "matched_fragments": 290, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013044125.1", "gtdb_species": "s__Acidocella sp013044125", "ani": 77.776, "matched_fragments": 220, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014201825.1", "gtdb_species": "s__Acidocella aromatica", "ani": 77.5526, "matched_fragments": 253, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003137135.1", "gtdb_species": "s__Acidocella sp003137135", "ani": 77.4757, "matched_fragments": 281, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002255575.1", "gtdb_species": "s__Acidocella sp002255575", "ani": 77.2637, "matched_fragments": 225, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002281005.1", "gtdb_species": "s__Acidocella sp002281005", "ani": 77.1099, "matched_fragments": 114, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018971725.1", "gtdb_species": "s__Acidocella sp018971725", "ani": 77.0787, "matched_fragments": 161, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidocella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902712915.1", "gtdb_species": "s__Acidiphilium sp002255515", "ani": 76.7539, "matched_fragments": 195, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidiphilium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000202835.1", "gtdb_species": "s__Acidiphilium multivorum", "ani": 76.6784, "matched_fragments": 211, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidiphilium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_903907955.1", "gtdb_species": "s__BOG-930 sp903907955", "ani": 76.4683, "matched_fragments": 175, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_001899585.1", "gtdb_species": "s__70-18 sp001899585", "ani": 76.4268, "matched_fragments": 228, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__70-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003133065.1", "gtdb_species": "s__BOG-908 sp003133065", "ani": 76.3068, "matched_fragments": 129, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-908", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019084075.1", "gtdb_species": "s__G192 sp019084075", "ani": 76.2004, "matched_fragments": 176, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__G192", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009693795.1", "gtdb_species": "s__SHWF01 sp009693795", "ani": 76.133, "matched_fragments": 61, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__SHWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903918195.1", "gtdb_species": "s__BOG-930 sp903918195", "ani": 76.1198, "matched_fragments": 158, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001982615.1", "gtdb_species": "s__Roseomonas deserti", "ani": 75.9571, "matched_fragments": 179, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903896535.1", "gtdb_species": "s__CAITYE01 sp903896535", "ani": 75.9016, "matched_fragments": 109, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAITYE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_902706185.1", "gtdb_species": "s__Roseomonas sp902706185", "ani": 75.8603, "matched_fragments": 196, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016107305.1", "gtdb_species": "s__Roseomonas sp016107305", "ani": 75.7704, "matched_fragments": 93, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000711725.1", "gtdb_species": "s__Roseomonas aerilata", "ani": 75.7422, "matched_fragments": 107, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014490485.1", "gtdb_species": "s__Roseomonas aerophila", "ani": 75.6493, "matched_fragments": 155, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003164455.1", "gtdb_species": "s__BOG-930 sp003164455", "ani": 75.583, "matched_fragments": 89, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acidocella", "s__Acidocella atsumiense_A" ], "_genome_taxon": [ "Rhodovastum", "atsumiense", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acidocella", "s__Acidocella atsumiense_A", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Acidocella", "Acidocella", "atsumiense", "A" ], "_meo": [ { "id": "MEO_0000147", "label": "root nodule" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }