{ "type": "genome", "identifier": "GCA_026225175.1", "organism": "Mycobacterium alsense", "title": "Mycobacterium alsense", "description": "derived from metagenome; fragmented assembly; genome length too small", "data type": "Genome sequencing and assembly", "organization": "Next generation Ecosystem Experiment Arctic", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026225175.1", "bioproject": "PRJNA830531", "biosample": "SAMN27728446", "wgs_master": "JAMFSH000000000.1", "refseq_category": "na", "taxid": "324058", "species_taxid": "324058", "organism_name": "Mycobacterium alsense", "infraspecific_name": "", "isolate": "NGEE_A_bin30", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/17", "asm_name": "ASM2622517v1", "submitter": "Next generation Ecosystem Experiment Arctic", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/225/175/GCA_026225175.1_ASM2622517v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-17", "dateModified": "2022-11-17", "datePublished": "2022-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium alsense" ], "sample_taxid": [ "324058" ], "sample_host_organism": [ "Alnus alnobetula subsp. fruticosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Alaska, Seward Peninsula" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.98, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3776125", "Number of Sequences": "1123", "Longest Sequences (bp)": "19872", "N50 (bp)": "3755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "2708", "Average Protein Length": "272.7", "Coding Ratio (%)": "58.7", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium cookii", "strain": "strain=JCM 12404", "accession": "GCA_010727945.1", "taxid": 1775, "species_taxid": 1775, "relation_to_type": "type", "validated": true, "ani": 82.5847, "matched_fragments": 486, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=DSM 45166", "accession": "GCA_002101735.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 79.796, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=DSM 44243", "accession": "GCA_002101595.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.6696, "matched_fragments": 354, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=ATCC 51131", "accession": "GCA_000974705.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.645, "matched_fragments": 290, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium fragae", "strain": "strain=DSM 45731", "accession": "GCA_002102185.1", "taxid": 1260918, "species_taxid": 1260918, "relation_to_type": "type", "validated": true, "ani": 79.5545, "matched_fragments": 381, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium numidiamassiliense", "strain": "strain=AB215", "accession": "GCA_900157365.1", "taxid": 1841861, "species_taxid": 1841861, "relation_to_type": "type", "validated": true, "ani": 79.2061, "matched_fragments": 322, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 79.1585, "matched_fragments": 368, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=DSM 44553", "accession": "GCA_002102335.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 78.9514, "matched_fragments": 312, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shigaense", "strain": "strain=JCM 32072", "accession": "GCA_002356315.1", "taxid": 722731, "species_taxid": 722731, "relation_to_type": "type", "validated": true, "ani": 78.9238, "matched_fragments": 308, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shigaense", "strain": "strain=UN-152", "accession": "GCA_002983495.1", "taxid": 722731, "species_taxid": 722731, "relation_to_type": "type", "validated": true, "ani": 78.8917, "matched_fragments": 313, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 78.2699, "matched_fragments": 252, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", 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