{
    "type": "genome",
    "identifier": "GCA_026225255.1",
    "organism": "Methylacidimicrobium fagopyrum",
    "title": "Methylacidimicrobium fagopyrum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Next generation Ecosystem Experiment Arctic",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026225255.1",
        "bioproject": "PRJNA830531",
        "biosample": "SAMN27732620",
        "wgs_master": "JAMFSJ000000000.1",
        "refseq_category": "na",
        "taxid": "1041767",
        "species_taxid": "1041767",
        "organism_name": "Methylacidimicrobium fagopyrum",
        "infraspecific_name": "",
        "isolate": "NGEE_A_bin29",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/17",
        "asm_name": "ASM2622525v1",
        "submitter": "Next generation Ecosystem Experiment Arctic",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/225/255/GCA_026225255.1_ASM2622525v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-17",
    "dateModified": "2022-11-17",
    "datePublished": "2022-11-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylacidimicrobium fagopyrum"
        ],
        "sample_taxid": [
            "1041767"
        ],
        "sample_host_organism": [
            "Alnus alnobetula subsp. fruticosa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Alaska, Seward Peninsula"
        ],
        "sample_host_location_id": [],
        "data_size": "1.107 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 0.84,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3921926",
        "Number of Sequences": "79",
        "Longest Sequences (bp)": "258687",
        "N50 (bp)": "74908",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.6",
        "Number of CDSs": "3100",
        "Average Protein Length": "363.3",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.37,
            "contamination": 0.84,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
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                "total_fragments": 1266,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
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                "mean_intra_species_ani": "99.65",
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                "num_clustered_genomes": 3,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "matched_fragments": 295,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 5,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
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            },
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                "status": "-"
            },
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                "ani_circumscription_radius": 95.0,
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                "status": "-"
            },
            {
                "accession": "GCA_903827955.1",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903861445.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_af": "0.91",
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            },
            {
                "accession": "GCA_903858275.1",
                "gtdb_species": "s__UBA11358 sp903858275",
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                "matched_fragments": 269,
                "total_fragments": 1266,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
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            },
            {
                "accession": "GCA_903921455.1",
                "gtdb_species": "s__UBA11358 sp903921455",
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                "total_fragments": 1266,
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003151855.1",
                "gtdb_species": "s__UBA11358 sp003151855",
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                "matched_fragments": 241,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903872345.1",
                "gtdb_species": "s__UBA11358 sp903872345",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
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                "accession": "GCA_903835255.1",
                "gtdb_species": "s__UBA11358 sp903835255",
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                "matched_fragments": 151,
                "total_fragments": 1266,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
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                "num_clustered_genomes": 7,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA11358",
        "g__UBA11358",
        "s__UBA11358 sp026225255"
    ],
    "_genome_taxon": [
        "Methylacidimicrobium",
        "fagopyrum",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA11358",
        "g__UBA11358",
        "s__UBA11358 sp026225255",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "UBA11358",
        "UBA11358",
        "UBA11358",
        "sp026225255"
    ],
    "_meo": [
        {
            "id": "MEO_0000147",
            "label": "root nodule"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}