{ "type": "genome", "identifier": "GCA_026225455.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Next generation Ecosystem Experiment Arctic", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026225455.1", "bioproject": "PRJNA830531", "biosample": "SAMN27732602", "wgs_master": "JAMFSV000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "NGEE_A_bin18", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/17", "asm_name": "ASM2622545v1", "submitter": "Next generation Ecosystem Experiment Arctic", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/225/455/GCA_026225455.1_ASM2622545v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-17", "dateModified": "2022-11-17", "datePublished": "2022-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [ "Alnus alnobetula subsp. fruticosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Alaska, Seward Peninsula" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 29.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3641013", "Number of Sequences": "381", "Longest Sequences (bp)": "57950", "N50 (bp)": "13471", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "2874", "Average Protein Length": "314.6", "Coding Ratio (%)": "74.5", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 77.2275, "matched_fragments": 220, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terricola", "strain": "strain=LMG 20594", "accession": "GCA_902833815.1", "taxid": 169427, "species_taxid": 169427, "relation_to_type": "type", "validated": true, "ani": 77.0896, "matched_fragments": 249, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terricola", "strain": "strain=LMG 20594", "accession": "GCA_900142195.1", "taxid": 169427, "species_taxid": 169427, "relation_to_type": "type", "validated": true, "ani": 77.0622, "matched_fragments": 248, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia elongata", "strain": "strain=5N", "accession": "GCA_013177735.1", "taxid": 2675747, "species_taxid": 2675747, "relation_to_type": "type", "validated": true, "ani": 77.0508, "matched_fragments": 225, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 77.037, "matched_fragments": 208, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 77.0135, "matched_fragments": 202, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 76.9364, "matched_fragments": 253, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 76.8857, "matched_fragments": 201, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_007556815.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 76.7751, "matched_fragments": 218, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_900113825.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 76.7548, "matched_fragments": 220, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 29.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009765705.1", "gtdb_species": "s__LMUX01 sp009765705", "ani": 78.3447, "matched_fragments": 318, "total_fragments": 1023, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__LMUX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177725.1", "gtdb_species": "s__Paraburkholderia susongensis", "ani": 77.1164, "matched_fragments": 216, "total_fragments": 1023, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142195.1", "gtdb_species": "s__Paraburkholderia terricola", "ani": 77.0838, "matched_fragments": 247, "total_fragments": 1023, "gtdb_taxonomy": 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