{ "type": "genome", "identifier": "GCA_026239495.1", "organism": "Spiroplasma phoeniceum", "title": "Spiroplasma phoeniceum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Basel", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026239495.1", "bioproject": "PRJNA885610", "biosample": "SAMN31274527", "wgs_master": "", "refseq_category": "na", "taxid": "47835", "species_taxid": "47835", "organism_name": "Spiroplasma phoeniceum", "infraspecific_name": "", "isolate": "PmM2021_Spiro", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/19", "asm_name": "ASM2623949v1", "submitter": "University of Basel", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/239/495/GCA_026239495.1_ASM2623949v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-19", "dateModified": "2022-11-19", "datePublished": "2022-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma phoeniceum" ], "sample_taxid": [ "47835" ], "sample_host_organism": [ "Pieris mannii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2179570", "Number of Sequences": "1", "Longest Sequences (bp)": "2179570", "N50 (bp)": "2179570", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "24.4", "Number of CDSs": "3019", "Average Protein Length": "102.9", "Coding Ratio (%)": "42.8", "Number of rRNAs": "3", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma phoeniceum", "strain": "strain=P40", "accession": "GCA_003339775.1", "taxid": 47835, "species_taxid": 47835, "relation_to_type": "type", "validated": true, "ani": 91.5743, "matched_fragments": 381, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma citri", "strain": "strain=R8-A2", "accession": "GCA_001886855.1", "taxid": 2133, "species_taxid": 2133, "relation_to_type": "type", "validated": true, "ani": 88.7732, "matched_fragments": 349, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma mirum", "strain": "strain=ATCC 29335", "accession": "GCA_000517365.1", "taxid": 2144, "species_taxid": 2144, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7815, "matched_fragments": 131, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma mirum", "strain": "strain=SMCA", "accession": "GCA_000565195.1", "taxid": 2144, "species_taxid": 2144, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6997, "matched_fragments": 133, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma syrphidicola", "strain": "strain=EA-1", "accession": "GCA_000400955.1", "taxid": 216945, "species_taxid": 216945, "relation_to_type": "type", "validated": true, "ani": 78.3049, "matched_fragments": 152, "total_fragments": 726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma chrysopicola", "strain": "strain=DF-1", "accession": "GCA_000400935.1", "taxid": 216933, "species_taxid": 216933, "relation_to_type": "type", "validated": true, 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