{
    "type": "genome",
    "identifier": "GCA_026387335.1",
    "organism": "Candidatus Omnitrophica bacterium",
    "title": "Candidatus Omnitrophica bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026387335.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026280",
        "wgs_master": "JAPLLX000000000.1",
        "refseq_category": "na",
        "taxid": "2035772",
        "species_taxid": "2035772",
        "organism_name": "Candidatus Omnitrophica bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0920_WC90_MAG_43_22",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2638733v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/387/335/GCA_026387335.1_ASM2638733v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Omnitrophota bacterium"
        ],
        "sample_taxid": [
            "2035772"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.393 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1383893",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "328928",
        "N50 (bp)": "204744",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.8",
        "Number of CDSs": "1314",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "92.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002440965.1",
                "gtdb_species": "s__UBA6233 sp002440965",
                "ani": 78.3035,
                "matched_fragments": 145,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Omnitrophota;c__Koll11;o__GIF10;f__UBA6249;g__UBA6233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002774445.1",
                "gtdb_species": "s__GCA-002774445 sp002774445",
                "ani": 76.9882,
                "matched_fragments": 78,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Omnitrophota;c__Koll11;o__GIF10;f__UBA6249;g__GCA-002774445",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018897555.1",
                "gtdb_species": "s__UBA6249 sp018897555",
                "ani": 76.5133,
                "matched_fragments": 52,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Omnitrophota;c__Koll11;o__GIF10;f__UBA6249;g__UBA6249",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Omnitrophota",
        "c__Koll11",
        "o__Gygaellales",
        "f__Profunditerraquicolaceae",
        "g__UBA6233",
        "s__UBA6233 sp026387335"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Omnitrophica",
        "bacterium",
        "d__Bacteria",
        "p__Omnitrophota",
        "c__Koll11",
        "o__Gygaellales",
        "f__Profunditerraquicolaceae",
        "g__UBA6233",
        "s__UBA6233 sp026387335",
        "Bacteria",
        "Omnitrophota",
        "Koll11",
        "Gygaellales",
        "Profunditerraquicolaceae",
        "UBA6233",
        "UBA6233",
        "sp026387335"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}