{ "type": "genome", "identifier": "GCA_026388315.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026388315.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026231", "wgs_master": "JAPLKA000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "LacPavin_0419_WC70S_MAG_45_14", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2638831v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/388/315/GCA_026388315.1_ASM2638831v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.41, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3802853", "Number of Sequences": "131", "Longest Sequences (bp)": "232890", "N50 (bp)": "46654", "Gap Ratio (%)": "0.000920", "GCcontent (%)": "44.6", "Number of CDSs": "3560", "Average Protein Length": "297.0", "Coding Ratio (%)": "83.4", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 3.41, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903822335.1", "gtdb_species": "s__CAIJOT01 sp903822335", "ani": 80.0156, "matched_fragments": 129, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__CAIJOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013824835.1", "gtdb_species": "s__PNOM01 sp013824835", "ani": 78.1256, "matched_fragments": 134, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__PNOM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002071245.1", "gtdb_species": "s__MWEV01 sp002071245", "ani": 77.1657, "matched_fragments": 128, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__MWEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002428485.1", "gtdb_species": "s__UBA5609 sp002428485", "ani": 77.0791, "matched_fragments": 72, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__UBA5609", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.28", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017992765.1", "gtdb_species": "s__UBA5609 sp017992765", "ani": 75.8809, "matched_fragments": 58, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__UBA5609", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota_G", "c__Syntrophorhabdia", "o__Syntrophorhabdales", "f__Syntrophorhabdaceae", "g__MWEV01", "s__MWEV01 sp026388315" ], "_genome_taxon": [ "Pseudomonadota", "bacterium", "d__Bacteria", "p__Desulfobacterota_G", "c__Syntrophorhabdia", "o__Syntrophorhabdales", "f__Syntrophorhabdaceae", "g__MWEV01", "s__MWEV01 sp026388315", "Bacteria", "Desulfobacterota", "G", "Syntrophorhabdia", "Syntrophorhabdales", "Syntrophorhabdaceae", "MWEV01", "MWEV01", "sp026388315" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }