{ "type": "genome", "identifier": "GCA_026389355.1", "organism": "Nostocales cyanobacterium LacPavin_0920_SED1_MAG_38_18", "title": "Nostocales cyanobacterium LacPavin_0920_SED1_MAG_38_18", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026389355.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026177", "wgs_master": "JAPLHY000000000.1", "refseq_category": "na", "taxid": "2968979", "species_taxid": "2968979", "organism_name": "Nostocales cyanobacterium LacPavin_0920_SED1_MAG_38_18", "infraspecific_name": "", "isolate": "LacPavin_0920_SED1_MAG_38_18", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2638935v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/389/355/GCA_026389355.1_ASM2638935v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Nostocales cyanobacterium LacPavin_0920_SED1_MAG_38_18" ], "sample_taxid": [ "2968979" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5303486", "Number of Sequences": "198", "Longest Sequences (bp)": "140556", "N50 (bp)": "43643", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "4650", "Average Protein Length": "294.5", "Coding Ratio (%)": "77.5", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anabaena cylindrica", "strain": "strain=NIES-19", "accession": "GCA_002367955.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 80.5118, "matched_fragments": 906, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anabaena cylindrica", "strain": "strain=PCC 7122", "accession": "GCA_000317695.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 80.4813, "matched_fragments": 917, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc punctiforme", "strain": "strain=ATCC 29133; PCC 73102", "accession": "GCA_000020025.1", "taxid": 272131, "species_taxid": 272131, "relation_to_type": "type", "validated": true, "ani": 77.083, "matched_fragments": 443, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc favosum", "strain": "strain=CHAB 5714", "accession": "GCA_020829495.1", "taxid": 2907819, "species_taxid": 2907819, "relation_to_type": "type", "validated": true, "ani": 77.0798, "matched_fragments": 460, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cylindrospermopsis raciborskii", "strain": "strain=Cr2010", "accession": "GCA_003367075.2", "taxid": 77022, "species_taxid": 77022, "relation_to_type": "reftype", "validated": true, "ani": 76.6005, "matched_fragments": 266, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fischerella thermalis", "strain": "strain=PCC 7521", "accession": "GCA_000317225.1", "taxid": 372787, "species_taxid": 372787, "relation_to_type": "type", "validated": true, "ani": 76.4204, "matched_fragments": 275, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorogloeopsis fritschii", "strain": "strain=PCC 6912", "accession": "GCA_003990575.1", "taxid": 1124, "species_taxid": 1124, "relation_to_type": "type", "validated": true, "ani": 76.2873, "matched_fragments": 283, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Iningainema tapete", "strain": "strain=BLCC-T55", "accession": "GCA_014698965.1", "taxid": 2806730, "species_taxid": 2806730, "relation_to_type": "type", "validated": true, "ani": 76.2444, "matched_fragments": 268, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brasilonema sennae", "strain": "strain=CENA114", "accession": "GCA_006968745.1", "taxid": 1397703, "species_taxid": 1397703, "relation_to_type": "type", "validated": true, "ani": 76.1873, "matched_fragments": 233, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Scytonema hofmannii", "strain": "strain=PCC 7110", "accession": "GCA_000346485.2", "taxid": 34078, "species_taxid": 34078, "relation_to_type": "type", "validated": true, "ani": 76.1122, "matched_fragments": 238, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dulcicalothrix desertica", "strain": "strain=PCC 7102", "accession": "GCA_003991905.1", "taxid": 32056, "species_taxid": 32056, "relation_to_type": "type", "validated": true, "ani": 75.8363, "matched_fragments": 169, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dulcicalothrix desertica", "strain": "strain=PCC 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"Cyanobacteriales", "Nostocaceae", "Dolichospermum", "Dolichospermum", "heterosporum" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }