{ "type": "genome", "identifier": "GCA_026389835.1", "organism": "Chloroflexales bacterium", "title": "Chloroflexales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026389835.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026155", "wgs_master": "JAPLHC000000000.1", "refseq_category": "na", "taxid": "2725990", "species_taxid": "2725990", "organism_name": "Chloroflexales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC50_MAG_51_8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2638983v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/389/835/GCA_026389835.1_ASM2638983v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexales bacterium" ], "sample_taxid": [ "2725990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.917 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.2, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3199011", "Number of Sequences": "254", "Longest Sequences (bp)": "100741", "N50 (bp)": "21479", "Gap Ratio (%)": "0.079650", "GCcontent (%)": "51.4", "Number of CDSs": "2669", "Average Protein Length": "321.2", "Coding Ratio (%)": "80.4", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 98.2, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903889425.1", "gtdb_species": "s__UBA965 sp903889425", "ani": 84.257, "matched_fragments": 614, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__UBA965", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002292925.1", "gtdb_species": "s__UBA965 sp002292925", "ani": 83.674, "matched_fragments": 602, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__UBA965", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903868295.1", "gtdb_species": "s__UBA965 sp903868295", "ani": 77.2353, "matched_fragments": 107, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__UBA965", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003670675.1", "gtdb_species": "s__UBA965 sp003670675", "ani": 77.1991, "matched_fragments": 74, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__UBA965", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.71", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903932805.1", "gtdb_species": "s__UBA965 sp903932805", "ani": 77.1111, "matched_fragments": 83, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__UBA965", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.095, "cell_length": 0.544, "doubling_h": 0.618, "growth_tmp": 51.444, "optimum_tmp": 47.645, "optimum_ph": 7.75, "genome_size": 5160832.75, "gc_content": 58.265, "coding_genes": 4001.221, "rRNA16S_genes": 2.666, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.5, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.25, "thermophilic_range_tmp": 0.75, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.25, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.75, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Chloroflexales", "f__Roseiflexaceae", "g__UBA965", "s__UBA965 sp943328915" ], "_genome_taxon": [ "Chloroflexales", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Chloroflexales", "f__Roseiflexaceae", "g__UBA965", "s__UBA965 sp943328915", "Bacteria", "Chloroflexota", "Chloroflexia", "Chloroflexales", "Roseiflexaceae", "UBA965", "UBA965", "sp943328915" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }