{
    "type": "genome",
    "identifier": "GCA_026389955.1",
    "organism": "Caldilinea sp.",
    "title": "Caldilinea sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026389955.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026151",
        "wgs_master": "JAPLGY000000000.1",
        "refseq_category": "na",
        "taxid": "2293560",
        "species_taxid": "2293560",
        "organism_name": "Caldilinea sp.",
        "infraspecific_name": "",
        "isolate": "LacPavin_0920_WC12_MAG_62_7",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2638995v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/389/955/GCA_026389955.1_ASM2638995v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caldilinea sp."
        ],
        "sample_taxid": [
            "2293560"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.212 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 89.4,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4275927",
        "Number of Sequences": "784",
        "Longest Sequences (bp)": "39891",
        "N50 (bp)": "7040",
        "Gap Ratio (%)": "0.028672",
        "GCcontent (%)": "61.6",
        "Number of CDSs": "2972",
        "Average Protein Length": "327.0",
        "Coding Ratio (%)": "68.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Caldilinea aerophila",
                "strain": "strain=DSM 14535",
                "accession": "GCA_000281175.1",
                "taxid": 133453,
                "species_taxid": 133453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.241,
                "matched_fragments": 177,
                "total_fragments": 1000,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Litorilinea aerophila",
                "strain": "strain=ATCC BAA-2444",
                "accession": "GCA_006569185.2",
                "taxid": 1204385,
                "species_taxid": 1204385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8896,
                "matched_fragments": 106,
                "total_fragments": 1000,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 89.4,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018969295.1",
                "gtdb_species": "s__Caldilinea sp018969295",
                "ani": 95.0107,
                "matched_fragments": 950,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903858085.1",
                "gtdb_species": "s__Caldilinea sp903858085",
                "ani": 92.1012,
                "matched_fragments": 816,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_016861025.1",
                "gtdb_species": "s__Caldilinea sp016861025",
                "ani": 77.1614,
                "matched_fragments": 254,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003451595.1",
                "gtdb_species": "s__Caldilinea sp003451595",
                "ani": 76.9221,
                "matched_fragments": 200,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903879975.1",
                "gtdb_species": "s__Caldilinea sp903879975",
                "ani": 76.8697,
                "matched_fragments": 181,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016710365.1",
                "gtdb_species": "s__Caldilinea sp016710365",
                "ani": 76.8185,
                "matched_fragments": 223,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014879855.1",
                "gtdb_species": "s__Caldilinea sp014879855",
                "ani": 76.6939,
                "matched_fragments": 185,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002391565.1",
                "gtdb_species": "s__Caldilinea sp002391565",
                "ani": 76.6621,
                "matched_fragments": 192,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.77",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000281175.1",
                "gtdb_species": "s__Caldilinea aerophila",
                "ani": 76.2304,
                "matched_fragments": 178,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015494005.1",
                "gtdb_species": "s__S144-5 sp015494005",
                "ani": 75.6678,
                "matched_fragments": 61,
                "total_fragments": 1000,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__S144-5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.155,
        "doubling_h": 1.01,
        "growth_tmp": 55.0,
        "optimum_tmp": 55.0,
        "optimum_ph": 8.0,
        "genome_size": 5143605.4,
        "gc_content": 58.8,
        "coding_genes": 4056.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.5,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__Caldilinea",
        "s__Caldilinea sp026389955"
    ],
    "_genome_taxon": [
        "Caldilinea",
        "sp.",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__Caldilinea",
        "s__Caldilinea sp026389955",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "Caldilineales",
        "Caldilineaceae",
        "Caldilinea",
        "Caldilinea",
        "sp026389955"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}