{ "type": "genome", "identifier": "GCA_026389995.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026389995.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026147", "wgs_master": "JAPLGU000000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC45_MAG_53_6", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2638999v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/389/995/GCA_026389995.1_ASM2638999v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.94, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4790626", "Number of Sequences": "962", "Longest Sequences (bp)": "33091", "N50 (bp)": "6302", "Gap Ratio (%)": "0.352000", "GCcontent (%)": "53.5", "Number of CDSs": "3877", "Average Protein Length": "274.4", "Coding Ratio (%)": "66.6", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 81.94, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903838415.1", "gtdb_species": "s__UBA5195 sp903838415", "ani": 99.1977, "matched_fragments": 916, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 22, "status": "conclusive" }, { "accession": "GCA_903875215.1", "gtdb_species": "s__UBA5195 sp903875215", "ani": 79.5821, "matched_fragments": 260, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_903846015.1", "gtdb_species": "s__UBA5195 sp903846015", "ani": 78.4281, "matched_fragments": 179, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903854805.1", "gtdb_species": "s__UBA5195 sp903854805", "ani": 78.2013, "matched_fragments": 186, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002412925.1", "gtdb_species": "s__UBA5195 sp002412925", "ani": 77.9884, "matched_fragments": 298, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903908605.1", "gtdb_species": "s__UBA5195 sp903908605", "ani": 77.5949, "matched_fragments": 141, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903822545.1", "gtdb_species": "s__CAIJPN01 sp903822545", "ani": 76.9884, "matched_fragments": 171, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__CAIJPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002840685.1", "gtdb_species": "s__UBA8950 sp002840685", "ani": 76.941, "matched_fragments": 146, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA8950", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903910795.1", "gtdb_species": "s__UBA5195 sp903910795", "ani": 76.734, "matched_fragments": 155, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016213105.1", "gtdb_species": "s__JACPVF01 sp016213105", "ani": 76.4309, "matched_fragments": 127, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__JACPVF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011047105.1", "gtdb_species": "s__UBA5195 sp011047105", "ani": 76.3414, "matched_fragments": 148, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002473085.1", "gtdb_species": "s__UBA7227 sp002473085", "ani": 75.9126, "matched_fragments": 52, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA7227", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.72", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_003130845.1", "gtdb_species": "s__UBA5195 sp003130845", "ani": 75.8196, "matched_fragments": 69, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__UBA5195", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013152325.1", "gtdb_species": "s__Desulfolinea sp013152325", "ani": 75.4606, "matched_fragments": 61, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__Desulfolinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Anaerolineales", "f__Villigracilaceae", "g__UBA5195", "s__UBA5195 sp903838415" ], "_genome_taxon": [ "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Anaerolineales", "f__Villigracilaceae", "g__UBA5195", "s__UBA5195 sp903838415", "Bacteria", "Chloroflexota", "Anaerolineae", "Anaerolineales", "Villigracilaceae", "UBA5195", "UBA5195", "sp903838415" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }