{ "type": "genome", "identifier": "GCA_026392455.1", "organism": "Propionibacteriales bacterium", "title": "Propionibacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026392455.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026024", "wgs_master": "JAPLCB000000000.1", "refseq_category": "na", "taxid": "2015801", "species_taxid": "2015801", "organism_name": "Propionibacteriales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_WC90_MAG_70_26", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639245v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/392/455/GCA_026392455.1_ASM2639245v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Propionibacteriales bacterium" ], "sample_taxid": [ "2015801" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.952 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3552019", "Number of Sequences": "11", "Longest Sequences (bp)": "764089", "N50 (bp)": "503778", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "3485", "Average Protein Length": "316.8", "Coding Ratio (%)": "93.2", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola ginsengisoli", "strain": "strain=Gsoil 097", "accession": "GCA_003725695.1", "taxid": 661483, "species_taxid": 661483, "relation_to_type": "type", "validated": true, "ani": 83.7471, "matched_fragments": 841, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola solisilvae", "strain": "strain=KIS18-7", "accession": "GCA_003725775.1", "taxid": 1542737, "species_taxid": 1542737, "relation_to_type": "type", "validated": true, "ani": 82.7175, "matched_fragments": 810, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 79.8226, "matched_fragments": 552, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", "accession": "GCA_003752505.1", "taxid": 86796, "species_taxid": 86796, "relation_to_type": "type", "validated": true, "ani": 79.7775, "matched_fragments": 545, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 79.7691, "matched_fragments": 567, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 79.6797, "matched_fragments": 569, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 79.5909, "matched_fragments": 496, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.5845, "matched_fragments": 473, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 79.5759, "matched_fragments": 571, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 79.5636, "matched_fragments": 575, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 79.5295, "matched_fragments": 516, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 79.3867, "matched_fragments": 485, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides euryhalodurans", "strain": "strain=MMS17-SY117", "accession": "GCA_004564375.1", "taxid": 2518370, "species_taxid": 2518370, "relation_to_type": "type", "validated": true, "ani": 79.3629, "matched_fragments": 498, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 79.352, "matched_fragments": 538, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 79.333, "matched_fragments": 475, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 79.307, "matched_fragments": 530, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 79.241, "matched_fragments": 538, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernaquae", "strain": "strain=K1W22B-1", "accession": "GCA_003600895.1", "taxid": 2321396, "species_taxid": 2321396, "relation_to_type": "type", "validated": true, "ani": 79.2246, "matched_fragments": 437, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 79.2022, "matched_fragments": 475, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 79.1136, "matched_fragments": 483, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides psychrotolerans", "strain": "strain=CGMCC 1.11156", "accession": "GCA_900113685.1", "taxid": 1005945, "species_taxid": 1005945, "relation_to_type": "type", 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