{ "type": "genome", "identifier": "GCA_026392615.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026392615.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026018", "wgs_master": "JAPLBV000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC40_MAG_65_18", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639261v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/392/615/GCA_026392615.1_ASM2639261v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetota bacterium" ], "sample_taxid": [ "2900548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.830 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.84, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2964487", "Number of Sequences": "601", "Longest Sequences (bp)": "32747", "N50 (bp)": "6154", "Gap Ratio (%)": "0.001923", "GCcontent (%)": "65.5", "Number of CDSs": "2446", "Average Protein Length": "282.7", "Coding Ratio (%)": "70.0", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, "species_taxid": 29299, "relation_to_type": "type", "validated": true, "ani": 76.4571, "matched_fragments": 80, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola solisilvae", "strain": "strain=KIS18-7", "accession": "GCA_003725775.1", "taxid": 1542737, "species_taxid": 1542737, "relation_to_type": "type", "validated": true, "ani": 76.4248, "matched_fragments": 85, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 76.3802, "matched_fragments": 73, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides houyundeii", "strain": "strain=78", "accession": "GCA_002865585.1", "taxid": 2045452, "species_taxid": 2045452, "relation_to_type": "type", "validated": true, "ani": 76.3154, "matched_fragments": 65, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus radiotolerans", "strain": "strain=SRS30216", "accession": "GCA_000017305.1", "taxid": 131568, "species_taxid": 131568, "relation_to_type": "type", "validated": true, "ani": 76.3139, "matched_fragments": 68, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.293, "matched_fragments": 109, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.252, "matched_fragments": 114, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 76.2344, "matched_fragments": 86, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 76.2209, "matched_fragments": 99, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 76.1928, "matched_fragments": 75, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea lactucae", "strain": "strain=NEAU-YG30", "accession": "GCA_003313395.1", "taxid": 2249762, "species_taxid": 2249762, "relation_to_type": "type", "validated": true, "ani": 76.1605, "matched_fragments": 87, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.1152, "matched_fragments": 83, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 76.1102, "matched_fragments": 95, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1077, "matched_fragments": 70, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea terrae", "strain": "strain=CH32", "accession": "GCA_004348995.1", "taxid": 2530383, "species_taxid": 2530383, "relation_to_type": "type", "validated": true, "ani": 76.1032, "matched_fragments": 90, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0871, "matched_fragments": 71, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allostreptomyces psammosilenae", "strain": "strain=DSM 42178", "accession": "GCA_013407765.1", "taxid": 1892865, "species_taxid": 1892865, "relation_to_type": "type", "validated": true, "ani": 76.037, "matched_fragments": 84, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 76.0138, "matched_fragments": 56, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides daeguensis", "strain": "strain=2C1-5", "accession": "GCA_019192965.1", "taxid": 908359, "species_taxid": 908359, "relation_to_type": "type", "validated": true, "ani": 75.9782, "matched_fragments": 79, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microtetraspora malaysiensis", "strain": "strain=NBRC 100735", "accession": "GCA_001528665.1", "taxid": 161358, "species_taxid": 161358, "relation_to_type": "type", "validated": true, "ani": 75.9022, "matched_fragments": 82, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 75.891, "matched_fragments": 58, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha cephalotaxi", "strain": "strain=DSM 45117", "accession": "GCA_013408535.1", "taxid": 504797, "species_taxid": 504797, "relation_to_type": "type", "validated": true, "ani": 75.7531, "matched_fragments": 70, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora iranica", "strain": "strain=IBRC-M 10403", "accession": "GCA_900101685.1", "taxid": 1271860, "species_taxid": 1271860, "relation_to_type": "type", "validated": true, "ani": 75.7302, "matched_fragments": 71, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha rutila", "strain": "strain=DSM 18448", "accession": "GCA_013407855.1", "taxid": 446787, "species_taxid": 446787, "relation_to_type": "type", "validated": true, "ani": 75.6974, "matched_fragments": 75, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 75.6898, "matched_fragments": 61, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 75.6735, "matched_fragments": 76, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora alba", "strain": "strain=DSM 45114", "accession": "GCA_004362515.1", "taxid": 504798, "species_taxid": 504798, "relation_to_type": "type", "validated": true, "ani": 75.6717, "matched_fragments": 78, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 75.6499, "matched_fragments": 119, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha singaporensis", "strain": "strain=DSM 22024", "accession": "GCA_900104745.1", "taxid": 117157, "species_taxid": 117157, "relation_to_type": "type", "validated": true, "ani": 75.6305, "matched_fragments": 74, "total_fragments": 674, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.84, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_009699015.1", "gtdb_species": "s__WLND01 sp009699015", "ani": 82.1288, "matched_fragments": 438, "total_fragments": 674, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__WLND01", "ani_circumscription_radius": 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