{ "type": "genome", "identifier": "GCA_026393135.1", "organism": "Corynebacteriales bacterium", "title": "Corynebacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026393135.1", "bioproject": "PRJNA852163", "biosample": "SAMN30025989", "wgs_master": "JAPLAS000000000.1", "refseq_category": "na", "taxid": "1957017", "species_taxid": "1957017", "organism_name": "Corynebacteriales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_WC90_MAG_69_11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639313v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/393/135/GCA_026393135.1_ASM2639313v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacteriales bacterium" ], "sample_taxid": [ "1957017" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4597195", "Number of Sequences": "137", "Longest Sequences (bp)": "161228", "N50 (bp)": "50096", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "4191", "Average Protein Length": "321.9", "Coding Ratio (%)": "88.0", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Williamsia herbipolensis", "strain": "strain=ARP1", "accession": "GCA_000964005.1", "taxid": 1603258, "species_taxid": 1603258, "relation_to_type": "type", "validated": true, "ani": 97.5224, "matched_fragments": 1334, "total_fragments": 1463, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Williamsia phyllosphaerae", "strain": "strain=CCM 7855", "accession": "GCA_014635305.1", "taxid": 885042, "species_taxid": 885042, "relation_to_type": "type", "validated": true, "ani": 82.2424, "matched_fragments": 1010, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia maris", "strain": "strain=DSM 44693", "accession": "GCA_024171815.1", "taxid": 72806, "species_taxid": 72806, "relation_to_type": "type", "validated": true, "ani": 82.2114, "matched_fragments": 1034, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia deligens", "strain": "strain=DSM 44902", "accession": "GCA_024171765.1", "taxid": 321325, "species_taxid": 321325, "relation_to_type": "type", "validated": true, "ani": 81.1057, "matched_fragments": 883, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia serinedens", "strain": "strain=DSM 45037", "accession": "GCA_024171725.1", "taxid": 391736, "species_taxid": 391736, "relation_to_type": "type", "validated": true, "ani": 80.9431, "matched_fragments": 914, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, "relation_to_type": "type", "validated": true, "ani": 79.2409, "matched_fragments": 583, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 78.9163, "matched_fragments": 564, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia sterculiae", "strain": "strain=CPCC 203464", "accession": "GCA_900156495.1", "taxid": 1344003, "species_taxid": 1344003, "relation_to_type": "type", "validated": true, "ani": 78.6485, "matched_fragments": 568, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 78.1769, "matched_fragments": 511, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=NBRC 100414", "accession": "GCA_000248055.2", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 78.1147, "matched_fragments": 511, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella agglutinans", "strain": "strain=CCTCC AB2014297", "accession": "GCA_004011865.1", "taxid": 1644129, "species_taxid": 1644129, "relation_to_type": "type", "validated": true, "ani": 77.9646, "matched_fragments": 499, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 77.7338, "matched_fragments": 502, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000964005.1", "gtdb_species": "s__Williamsia_A herbipolensis", "ani": 97.5224, "matched_fragments": 1334, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.03", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014635305.1", "gtdb_species": "s__Williamsia_A phyllosphaerae", "ani": 82.2297, "matched_fragments": 1012, "total_fragments": 1463, 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"Mycobacteriaceae", "Williamsia", "A", "Williamsia", "A", "herbipolensis" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }