{ "type": "genome", "identifier": "GCA_026393175.1", "organism": "Pseudonocardiales bacterium", "title": "Pseudonocardiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026393175.1", "bioproject": "PRJNA852163", "biosample": "SAMN30025990", "wgs_master": "JAPLAT000000000.1", "refseq_category": "na", "taxid": "2201155", "species_taxid": "2201155", "organism_name": "Pseudonocardiales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_WC70_MAG_75_20", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639317v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/393/175/GCA_026393175.1_ASM2639317v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardiales bacterium" ], "sample_taxid": [ "2201155" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.448 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.23, "contamination": 1.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5547723", "Number of Sequences": "712", "Longest Sequences (bp)": "54420", "N50 (bp)": "11872", "Gap Ratio (%)": "0.001082", "GCcontent (%)": "75.4", "Number of CDSs": "4875", "Average Protein Length": "294.3", "Coding Ratio (%)": "77.6", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 84.1394, "matched_fragments": 1006, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia petroleophila", "strain": "strain=CGMCC 4.1532", "accession": "GCA_014235185.1", "taxid": 37331, "species_taxid": 37331, "relation_to_type": "type", "validated": true, "ani": 84.0878, "matched_fragments": 1109, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia abyssalis", "strain": "strain=KRD168", "accession": "GCA_019263705.2", "taxid": 2792008, "species_taxid": 2792008, "relation_to_type": "type", "validated": true, "ani": 83.9516, "matched_fragments": 1062, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oceani", "strain": "strain=KRD185", "accession": "GCA_019263585.2", "taxid": 2792013, "species_taxid": 2792013, "relation_to_type": "type", "validated": true, "ani": 83.8876, "matched_fragments": 1090, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia broussonetiae", "strain": "strain=Gen 01", "accession": "GCA_013155125.1", "taxid": 2736640, "species_taxid": 2736640, "relation_to_type": "type", "validated": true, "ani": 83.5301, "matched_fragments": 1086, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kunmingensis", "strain": "strain=DSM 45301", "accession": "GCA_006716445.1", "taxid": 630975, "species_taxid": 630975, "relation_to_type": "type", "validated": true, "ani": 80.5284, "matched_fragments": 961, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia cypriaca", "strain": "strain=DSM 45511", "accession": "GCA_006717045.1", "taxid": 882449, "species_taxid": 882449, "relation_to_type": "type", "validated": true, "ani": 80.3099, "matched_fragments": 903, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kujensis", "strain": "strain=KCTC 29062", "accession": "GCA_021283305.1", "taxid": 1128675, "species_taxid": 1128675, "relation_to_type": "type", "validated": true, "ani": 79.6461, "matched_fragments": 862, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 79.5524, "matched_fragments": 827, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia terrae", "strain": "strain=RS11V-5", "accession": "GCA_021343995.1", "taxid": 2905831, "species_taxid": 2905831, "relation_to_type": "type", "validated": true, "ani": 79.4836, "matched_fragments": 874, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oroxyli", "strain": "strain=CGMCC 4.3143", "accession": "GCA_900102195.1", "taxid": 366584, "species_taxid": 366584, "relation_to_type": "type", "validated": true, "ani": 79.4178, "matched_fragments": 773, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 85.23, "contamination": 1.5, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014235185.1", "gtdb_species": "s__Pseudonocardia sp014235185", "ani": 84.1758, "matched_fragments": 1099, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006539565.1", "gtdb_species": "s__Pseudonocardia hydrocarbonoxydans", "ani": 84.1344, "matched_fragments": 1007, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019263705.1", "gtdb_species": "s__Pseudonocardia sp019263705", "ani": 83.9428, "matched_fragments": 1063, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019263585.1", "gtdb_species": "s__Pseudonocardia sp019263585", "ani": 83.9353, "matched_fragments": 1085, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_013155125.1", "gtdb_species": "s__Pseudonocardia broussonetiae", "ani": 83.4693, "matched_fragments": 1093, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018531445.1", "gtdb_species": "s__Pseudonocardia sp018531445", "ani": 80.9053, "matched_fragments": 918, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911925.1", "gtdb_species": "s__Pseudonocardia xinjiangensis", "ani": 80.5409, "matched_fragments": 852, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716445.1", "gtdb_species": "s__Pseudonocardia kunmingensis", "ani": 80.5129, "matched_fragments": 964, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006717045.1", "gtdb_species": "s__Pseudonocardia cypriaca", "ani": 80.2652, "matched_fragments": 911, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717175.1", "gtdb_species": "s__Pseudonocardia autotrophica_A", "ani": 79.676, "matched_fragments": 901, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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