{ "type": "genome", "identifier": "GCA_026393235.1", "organism": "Mycobacterium sp.", "title": "Mycobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026393235.1", "bioproject": "PRJNA852163", "biosample": "SAMN30025984", "wgs_master": "JAPLAN000000000.1", "refseq_category": "na", "taxid": "1785", "species_taxid": "1785", "organism_name": "Mycobacterium sp.", "infraspecific_name": "", "isolate": "LacPavin_0818_WC45_MAG_66_14", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639323v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/393/235/GCA_026393235.1_ASM2639323v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium sp." ], "sample_taxid": [ "1785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.868 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3119645", "Number of Sequences": "123", "Longest Sequences (bp)": "159132", "N50 (bp)": "53845", "Gap Ratio (%)": "0.005129", "GCcontent (%)": "66.2", "Number of CDSs": "2933", "Average Protein Length": "315.9", "Coding Ratio (%)": "89.1", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, "relation_to_type": "type", "validated": true, "ani": 79.4252, "matched_fragments": 504, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", "validated": true, "ani": 79.2053, "matched_fragments": 588, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", 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