{ "type": "genome", "identifier": "GCA_026393245.1", "organism": "Mycobacterium sp.", "title": "Mycobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026393245.1", "bioproject": "PRJNA852163", "biosample": "SAMN30025985", "wgs_master": "JAPLAO000000000.1", "refseq_category": "na", "taxid": "1785", "species_taxid": "1785", "organism_name": "Mycobacterium sp.", "infraspecific_name": "", "isolate": "LacPavin_0818_WC45_MAG_66_12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639324v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/393/245/GCA_026393245.1_ASM2639324v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium sp." ], "sample_taxid": [ "1785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.935 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.89, "contamination": 1.04, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3349023", "Number of Sequences": "364", "Longest Sequences (bp)": "96579", "N50 (bp)": "15923", "Gap Ratio (%)": "0.019050", "GCcontent (%)": "65.8", "Number of CDSs": "2984", "Average Protein Length": "302.9", "Coding Ratio (%)": "81.0", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, "relation_to_type": "type", "validated": true, "ani": 79.5327, "matched_fragments": 481, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", "validated": true, "ani": 79.3743, "matched_fragments": 564, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", 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922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 78.4841, "matched_fragments": 398, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_001044255.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 78.4701, "matched_fragments": 431, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 78.4467, "matched_fragments": 406, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium thermoresistibile", "strain": "strain=NCTC10409", "accession": "GCA_900187065.1", "taxid": 1797, "species_taxid": 1797, "relation_to_type": "type", "validated": true, "ani": 78.4444, "matched_fragments": 402, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_002086595.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 78.4322, "matched_fragments": 439, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium arabiense", "strain": "strain=JCM 18538", "accession": "GCA_010731815.2", "taxid": 1286181, "species_taxid": 1286181, "relation_to_type": "type", "validated": true, "ani": 78.3931, "matched_fragments": 398, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mengxianglii", "strain": "strain=Z-34", "accession": "GCA_015710575.2", "taxid": 2736649, "species_taxid": 2736649, "relation_to_type": "type", "validated": true, "ani": 78.3841, "matched_fragments": 384, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 78.3644, "matched_fragments": 379, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 78.3561, "matched_fragments": 416, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium 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