{ "type": "genome", "identifier": "GCA_026397505.1", "organism": "candidate division Zixibacteria bacterium", "title": "candidate division Zixibacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026397505.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026508", "wgs_master": "JAPLUR000000000.1", "refseq_category": "na", "taxid": "2053527", "species_taxid": "2053527", "organism_name": "candidate division Zixibacteria bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_SED3_MAG_50_15", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639750v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/397/505/GCA_026397505.1_ASM2639750v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "candidate division Zixibacteria bacterium" ], "sample_taxid": [ "2053527" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.985 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3435063", "Number of Sequences": "147", "Longest Sequences (bp)": "112004", "N50 (bp)": "36580", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "2763", "Average Protein Length": "345.5", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900498245.1", "gtdb_species": "s__UNRQ01 sp900498245", "ani": 76.7781, "matched_fragments": 157, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__PGXB01;g__UNRQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002838945.1", "gtdb_species": "s__PGXB01 sp002838945", "ani": 76.4366, "matched_fragments": 93, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__PGXB01;g__PGXB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003641425.1", "gtdb_species": "s__PGXB01 sp003641425", "ani": 76.0625, "matched_fragments": 53, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__PGXB01;g__PGXB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016933955.1", "gtdb_species": "s__JAFGTT01 sp016933955", "ani": 75.8735, "matched_fragments": 69, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__PGXB01;g__JAFGTT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016933695.1", "gtdb_species": "s__JAFGAL01 sp016933695", "ani": 75.8122, "matched_fragments": 51, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__PGXB01;g__JAFGAL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Zixibacteria", "c__MSB-5A5", "o__GN15", "f__PGXB01", "g__JAPLUR01", "s__JAPLUR01 sp026397505" ], "_genome_taxon": [ "candidate", "division", "Zixibacteria", "bacterium", "d__Bacteria", "p__Zixibacteria", "c__MSB-5A5", "o__GN15", "f__PGXB01", "g__JAPLUR01", "s__JAPLUR01 sp026397505", "Bacteria", "Zixibacteria", "MSB-5A5", "GN15", "PGXB01", "JAPLUR01", "JAPLUR01", "sp026397505" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }