{ "type": "genome", "identifier": "GCA_026397725.1", "organism": "Verrucomicrobiota bacterium", "title": "Verrucomicrobiota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026397725.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026499", "wgs_master": "JAPLUI000000000.1", "refseq_category": "na", "taxid": "2026799", "species_taxid": "2026799", "organism_name": "Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "LacPavin_0419_WC70L_MAG_62_22", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639772v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/397/725/GCA_026397725.1_ASM2639772v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiota bacterium" ], "sample_taxid": [ "2026799" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "3.534 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "12562254", "Number of Sequences": "584", "Longest Sequences (bp)": "148616", "N50 (bp)": "40055", "Gap Ratio (%)": "0.009537", "GCcontent (%)": "61.6", "Number of CDSs": "8329", "Average Protein Length": "412.1", "Coding Ratio (%)": "82.0", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 76.9078, "matched_fragments": 279, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 76.6013, "matched_fragments": 254, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter luteus", "strain": "strain=G-1-1-1", "accession": "GCA_012913485.1", "taxid": 2728835, "species_taxid": 2728835, "relation_to_type": "type", "validated": true, "ani": 76.3069, "matched_fragments": 166, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter pohnpeiensis", "strain": "strain=KCTC 22041", "accession": "GCA_016595435.1", "taxid": 454153, "species_taxid": 454153, "relation_to_type": "type", "validated": true, "ani": 76.2721, "matched_fragments": 108, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 76.162, "matched_fragments": 131, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula luteola", "strain": "strain=YC6886", "accession": "GCA_014201715.1", "taxid": 595692, "species_taxid": 595692, "relation_to_type": "type", "validated": true, "ani": 75.9382, "matched_fragments": 75, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriroseicoccus oceanibius", "strain": "strain=T37", "accession": "GCA_010681825.2", "taxid": 2707525, "species_taxid": 2707525, "relation_to_type": "type", "validated": true, "ani": 75.4253, "matched_fragments": 55, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.0813, "matched_fragments": 91, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 74.9748, "matched_fragments": 81, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 74.7797, "matched_fragments": 98, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 74.6721, "matched_fragments": 51, "total_fragments": 3882, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903934285.1", "gtdb_species": "s__Luteolibacter sp903934285", "ani": 80.7848, "matched_fragments": 855, "total_fragments": 3882, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903826205.1", "gtdb_species": "s__Luteolibacter sp903826205", "ani": 80.6796, "matched_fragments": 874, "total_fragments": 3882, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": 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"gtdb_species": "s__Luteolibacter sp018969605", "ani": 76.9023, "matched_fragments": 146, "total_fragments": 3882, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903837825.1", "gtdb_species": "s__Luteolibacter sp903837825", "ani": 76.1394, "matched_fragments": 99, "total_fragments": 3882, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, 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"f__Akkermansiaceae", "g__Luteolibacter", "s__Luteolibacter sp026397725", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Verrucomicrobiales", "Akkermansiaceae", "Luteolibacter", "Luteolibacter", "sp026397725" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }