{
    "type": "genome",
    "identifier": "GCA_026397955.1",
    "organism": "Verrucomicrobiota bacterium",
    "title": "Verrucomicrobiota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026397955.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026486",
        "wgs_master": "JAPLTV000000000.1",
        "refseq_category": "na",
        "taxid": "2026799",
        "species_taxid": "2026799",
        "organism_name": "Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0920_WC57_MAG_64_54",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2639795v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/397/955/GCA_026397955.1_ASM2639795v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "2026799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.688 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 14.06,
        "strain_heterogeneity": 54.55,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2454854",
        "Number of Sequences": "126",
        "Longest Sequences (bp)": "171639",
        "N50 (bp)": "35874",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.7",
        "Number of CDSs": "1958",
        "Average Protein Length": "348.1",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=Ellin428",
                "accession": "GCA_000173075.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9495,
                "matched_fragments": 52,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=DSM 22515",
                "accession": "GCA_004341915.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.904,
                "matched_fragments": 54,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nibricoccus aquaticus",
                "strain": "strain=HZ-65",
                "accession": "GCA_002310495.1",
                "taxid": 2576891,
                "species_taxid": 2576891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.619,
                "matched_fragments": 58,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 14.06,
            "strain_heterogeneity": 54.55
        },
        "gtdb_result": [
            {
                "accession": "GCA_903853185.1",
                "gtdb_species": "s__UBA953 sp903853185",
                "ani": 90.8464,
                "matched_fragments": 349,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003569165.1",
                "gtdb_species": "s__UBA953 sp003569165",
                "ani": 88.7553,
                "matched_fragments": 543,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009924535.1",
                "gtdb_species": "s__UBA953 sp009924535",
                "ani": 88.6534,
                "matched_fragments": 372,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002293125.1",
                "gtdb_species": "s__UBA953 sp002293125",
                "ani": 88.2252,
                "matched_fragments": 540,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903910245.1",
                "gtdb_species": "s__UBA953 sp903910245",
                "ani": 87.2745,
                "matched_fragments": 324,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009917805.1",
                "gtdb_species": "s__UBA953 sp009917805",
                "ani": 87.2112,
                "matched_fragments": 352,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004293385.1",
                "gtdb_species": "s__UBA953 sp004293385",
                "ani": 86.8668,
                "matched_fragments": 240,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903913915.1",
                "gtdb_species": "s__UBA953 sp903913915",
                "ani": 86.2762,
                "matched_fragments": 540,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903831005.1",
                "gtdb_species": "s__UBA953 sp903831005",
                "ani": 85.756,
                "matched_fragments": 339,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903855995.1",
                "gtdb_species": "s__UBA953 sp903855995",
                "ani": 84.0043,
                "matched_fragments": 534,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_003569245.1",
                "gtdb_species": "s__UBA953 sp003569245",
                "ani": 82.1964,
                "matched_fragments": 434,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014193315.1",
                "gtdb_species": "s__UBA953 sp003569405",
                "ani": 82.0801,
                "matched_fragments": 408,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903829855.1",
                "gtdb_species": "s__UBA953 sp903829855",
                "ani": 81.9082,
                "matched_fragments": 349,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_903882335.1",
                "gtdb_species": "s__UBA953 sp903882335",
                "ani": 81.6426,
                "matched_fragments": 369,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__UBA953",
        "g__UBA953",
        "s__UBA953 sp026397955"
    ],
    "_genome_taxon": [
        "Verrucomicrobiota",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__UBA953",
        "g__UBA953",
        "s__UBA953 sp026397955",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "UBA953",
        "UBA953",
        "UBA953",
        "sp026397955"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}