{
    "type": "genome",
    "identifier": "GCA_026397995.1",
    "organism": "Verrucomicrobiota bacterium",
    "title": "Verrucomicrobiota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026397995.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026492",
        "wgs_master": "JAPLUB000000000.1",
        "refseq_category": "na",
        "taxid": "2026799",
        "species_taxid": "2026799",
        "organism_name": "Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0818_WC55_MAG_61_7",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2639799v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/397/995/GCA_026397995.1_ASM2639799v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "2026799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.963 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 69.91,
        "contamination": 8.85,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6836961",
        "Number of Sequences": "1739",
        "Longest Sequences (bp)": "24021",
        "N50 (bp)": "4606",
        "Gap Ratio (%)": "0.155946",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "4453",
        "Average Protein Length": "293.4",
        "Coding Ratio (%)": "57.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptacidiphilus rugosus",
                "strain": "strain=AM-16",
                "accession": "GCA_000744655.1",
                "taxid": 405783,
                "species_taxid": 405783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6267,
                "matched_fragments": 50,
                "total_fragments": 1322,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 69.91,
            "contamination": 8.85,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__PALSA-1440",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__UBA8199",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903873945.1",
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                "mean_intra_species_ani": "N/A",
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            },
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            },
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA7542",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__J093;g__DSVZ01",
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            },
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                "accession": "GCA_016199935.1",
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            },
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_gtdb_taxon": [
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        "p__Verrucomicrobiota",
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        "g__PALSA-1440",
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    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
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        "o__Limisphaerales",
        "f__UBA8199",
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        "s__PALSA-1440 sp903912925",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "UBA8199",
        "PALSA-1440",
        "PALSA-1440",
        "sp903912925"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}