{
    "type": "genome",
    "identifier": "GCA_026398235.1",
    "organism": "Verrucomicrobiota bacterium",
    "title": "Verrucomicrobiota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026398235.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026469",
        "wgs_master": "JAPLTE000000000.1",
        "refseq_category": "na",
        "taxid": "2026799",
        "species_taxid": "2026799",
        "organism_name": "Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0818_WC40_MAG_59_38",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2639823v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/398/235/GCA_026398235.1_ASM2639823v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "2026799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.733 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2577390",
        "Number of Sequences": "144",
        "Longest Sequences (bp)": "90150",
        "N50 (bp)": "27301",
        "Gap Ratio (%)": "0.001280",
        "GCcontent (%)": "58.8",
        "Number of CDSs": "2214",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Terrimicrobium sacchariphilum",
                "strain": "strain=NM-5",
                "accession": "GCA_001613545.1",
                "taxid": 690879,
                "species_taxid": 690879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7615,
                "matched_fragments": 60,
                "total_fragments": 788,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=Ellin428",
                "accession": "GCA_000173075.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1936,
                "matched_fragments": 92,
                "total_fragments": 788,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=DSM 22515",
                "accession": "GCA_004341915.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0521,
                "matched_fragments": 94,
                "total_fragments": 788,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.46,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
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                "accession": "GCA_903928175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__UBA695",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903933715.1",
                "gtdb_species": "s__UBA695 sp903933715",
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                "matched_fragments": 337,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__UBA695",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002298145.1",
                "gtdb_species": "s__UBA695 sp002298145",
                "ani": 78.0428,
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                "total_fragments": 788,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__UBA695",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001613545.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__Terrimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014879535.1",
                "gtdb_species": "s__JACTMZ01 sp014879535",
                "ani": 76.5859,
                "matched_fragments": 56,
                "total_fragments": 788,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__JACTMZ01;g__JACTMZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003167555.1",
                "gtdb_species": "s__AV80 sp003167555",
                "ani": 76.5392,
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                "total_fragments": 788,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__UBA10450;g__AV80",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
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                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_903901425.1",
                "gtdb_species": "s__CAIURC01 sp903901425",
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                "matched_fragments": 50,
                "total_fragments": 788,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__CAIURC01",
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                "status": "-"
            },
            {
                "accession": "GCA_003054655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__Terrimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000173075.1",
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                "mean_intra_species_ani": "99.97",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_903882875.1",
                "gtdb_species": "s__SXWH01 sp903882875",
                "ani": 76.0886,
                "matched_fragments": 69,
                "total_fragments": 788,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__SXWH01",
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                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_903642295.1",
                "gtdb_species": "s__CAHJWO01 sp903642295",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__UBA10450;g__CAHJWO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Chthoniobacterales",
        "f__Chthoniobacteraceae",
        "g__UBA695",
        "s__UBA695 sp026398235"
    ],
    "_genome_taxon": [
        "Verrucomicrobiota",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Chthoniobacterales",
        "f__Chthoniobacteraceae",
        "g__UBA695",
        "s__UBA695 sp026398235",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Chthoniobacterales",
        "Chthoniobacteraceae",
        "UBA695",
        "UBA695",
        "sp026398235"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}