{ "type": "genome", "identifier": "GCA_026399075.1", "organism": "Methylococcales bacterium", "title": "Methylococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026399075.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026430", "wgs_master": "JAPLRR000000000.1", "refseq_category": "na", "taxid": "2304002", "species_taxid": "2304002", "organism_name": "Methylococcales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_WC57_MAG_48_27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639907v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/399/075/GCA_026399075.1_ASM2639907v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylococcales bacterium" ], "sample_taxid": [ "2304002" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.167 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4080241", "Number of Sequences": "111", "Longest Sequences (bp)": "175554", "N50 (bp)": "63144", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.6", "Number of CDSs": "3614", "Average Protein Length": "317.1", "Coding Ratio (%)": "84.3", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylovulum psychrotolerans", "strain": "strain=Sph1", "accession": "GCA_002923755.1", "taxid": 1704499, "species_taxid": 1704499, "relation_to_type": "type", "validated": true, "ani": 77.1814, "matched_fragments": 208, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylovulum miyakonense", "strain": "strain=HT12", "accession": "GCA_000384075.1", "taxid": 645578, "species_taxid": 645578, "relation_to_type": "type", "validated": true, "ani": 77.1684, "matched_fragments": 204, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacter tundripaludum", "strain": "strain=SV96", "accession": "GCA_000190755.3", "taxid": 173365, "species_taxid": 173365, "relation_to_type": "type", "validated": true, "ani": 76.9059, "matched_fragments": 213, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacter marinus", "strain": "strain=A45", "accession": "GCA_000383855.1", "taxid": 34058, "species_taxid": 34058, "relation_to_type": "type", "validated": true, "ani": 76.7001, "matched_fragments": 123, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocucumis oryzae", "strain": "strain=Sn10-6", "accession": "GCA_000963695.1", "taxid": 1632867, "species_taxid": 1632867, "relation_to_type": "type", "validated": true, "ani": 76.5225, "matched_fragments": 80, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloglobulus morosus", "strain": "strain=KoM1", "accession": "GCA_000496735.2", "taxid": 1410681, "species_taxid": 1410681, "relation_to_type": "type", "validated": true, "ani": 76.4881, "matched_fragments": 101, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas denitrificans", "strain": "strain=FJG1", "accession": "GCA_000785705.2", "taxid": 1538553, "species_taxid": 1538553, "relation_to_type": "type", "validated": true, "ani": 76.2424, "matched_fragments": 82, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomicrobium lacus", "strain": "strain=LW14", "accession": "GCA_000527095.1", "taxid": 136992, "species_taxid": 136992, "relation_to_type": "type", "validated": true, "ani": 76.1602, "matched_fragments": 69, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas koyamae", "strain": "strain=Fw12E-Y", "accession": "GCA_019669905.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1435, "matched_fragments": 60, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas albis", "strain": "strain=EbA", "accession": "GCA_014850955.1", "taxid": 1854563, "species_taxid": 1854563, "relation_to_type": "type", "validated": true, "ani": 76.0166, "matched_fragments": 81, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosarcina fibrata", "strain": "strain=AML-C10", "accession": "GCA_000372865.1", "taxid": 105972, "species_taxid": 105972, "relation_to_type": "type", "validated": true, "ani": 76.0002, "matched_fragments": 65, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013140465.1", "gtdb_species": "s__KS41 sp013140465", "ani": 81.1703, "matched_fragments": 428, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003158415.1", "gtdb_species": "s__KS41 sp003158415", "ani": 78.083, "matched_fragments": 251, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903839795.1", "gtdb_species": "s__KS41 sp903839795", "ani": 77.9209, "matched_fragments": 202, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903873045.1", "gtdb_species": "s__KS41 sp903873045", "ani": 77.9104, "matched_fragments": 253, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903903365.1", "gtdb_species": "s__KS41 sp903903365", "ani": 77.8318, "matched_fragments": 238, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002256465.1", "gtdb_species": "s__KS41 sp002256465", "ani": 77.7412, "matched_fragments": 163, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002862125.1", "gtdb_species": "s__KS41 sp002862125", "ani": 77.696, "matched_fragments": 272, "total_fragments": 1300, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004299305.1", "gtdb_species": "s__Methylobacter_A sp004299305", "ani": 77.0729, "matched_fragments": 188, "total_fragments": 1300, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000190755.2", "gtdb_species": "s__Methylobacter_A tundripaludum", "ani": 76.9074, "matched_fragments": 213, "total_fragments": 1300, "gtdb_taxonomy": 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"Gammaproteobacteria", "Methylococcales", "Methylomonadaceae", "Methylobacter", "C", "Methylobacter", "C", "sp026399075" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }