{
    "type": "genome",
    "identifier": "GCA_026399565.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026399565.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026408",
        "wgs_master": "JAPLQV000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0920_WC57_MAG_60_7b",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2639956v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/399/565/GCA_026399565.1_ASM2639956v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.985 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.9,
        "contamination": 1.77,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3445608",
        "Number of Sequences": "836",
        "Longest Sequences (bp)": "32422",
        "N50 (bp)": "4857",
        "Gap Ratio (%)": "0.022899",
        "GCcontent (%)": "60.4",
        "Number of CDSs": "2626",
        "Average Protein Length": "276.5",
        "Coding Ratio (%)": "63.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Georgfuchsia toluolica",
                "strain": "strain=G5G6",
                "accession": "GCA_907163265.1",
                "taxid": 424218,
                "species_taxid": 424218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2203,
                "matched_fragments": 124,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurisoma sediminicola",
                "strain": "strain=DSM 26916",
                "accession": "GCA_003663955.1",
                "taxid": 1381557,
                "species_taxid": 1381557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1579,
                "matched_fragments": 152,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurisoma sediminicola",
                "strain": "strain=BSN1",
                "accession": "GCA_003865015.1",
                "taxid": 1381557,
                "species_taxid": 1381557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1395,
                "matched_fragments": 153,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Denitratisoma oestradiolicum",
                "strain": "strain=DSM 16959",
                "accession": "GCA_007844305.1",
                "taxid": 311182,
                "species_taxid": 311182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0019,
                "matched_fragments": 102,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Denitratisoma oestradiolicum",
                "strain": "strain=DSM 16959",
                "accession": "GCA_902813185.1",
                "taxid": 311182,
                "species_taxid": 311182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9521,
                "matched_fragments": 104,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum buckelii",
                "strain": "strain=U120",
                "accession": "GCA_012910785.2",
                "taxid": 200254,
                "species_taxid": 200254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8185,
                "matched_fragments": 85,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum anaerobium",
                "strain": "strain=LuFRes1",
                "accession": "GCA_012910705.2",
                "taxid": 182180,
                "species_taxid": 182180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6665,
                "matched_fragments": 101,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter luteus",
                "strain": "strain=DSM 27258",
                "accession": "GCA_004345725.1",
                "taxid": 1452487,
                "species_taxid": 1452487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5273,
                "matched_fragments": 74,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinimonas koreensis",
                "strain": "strain=DSM 17726",
                "accession": "GCA_000428465.1",
                "taxid": 356302,
                "species_taxid": 356302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4928,
                "matched_fragments": 109,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Verticiella sediminum",
                "strain": "strain=DSM 27279",
                "accession": "GCA_007558815.1",
                "taxid": 1247510,
                "species_taxid": 1247510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4502,
                "matched_fragments": 74,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.9,
            "contamination": 1.77,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016234745.1",
                "gtdb_species": "s__JACRAR01 sp016234745",
                "ani": 82.3876,
                "matched_fragments": 408,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__JACRAR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016194935.1",
                "gtdb_species": "s__JACRAR01 sp016194935",
                "ani": 79.501,
                "matched_fragments": 205,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__JACRAR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900174485.1",
                "gtdb_species": "s__Sterolibacterium denitrificans",
                "ani": 78.365,
                "matched_fragments": 157,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sterolibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903832735.1",
                "gtdb_species": "s__CAIYYX01 sp903832735",
                "ani": 78.3214,
                "matched_fragments": 194,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__CAIYYX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.50",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCF_003865015.1",
                "gtdb_species": "s__Sulfurisoma sediminicola",
                "ani": 78.1161,
                "matched_fragments": 154,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfurisoma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903904605.1",
                "gtdb_species": "s__CAIYYX01 sp903904605",
                "ani": 77.96,
                "matched_fragments": 207,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__CAIYYX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903930535.1",
                "gtdb_species": "s__CAIYYX01 sp903930535",
                "ani": 77.6453,
                "matched_fragments": 166,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__CAIYYX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016880655.1",
                "gtdb_species": "s__Fen-999 sp016880655",
                "ani": 77.427,
                "matched_fragments": 104,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Fen-999",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011330945.1",
                "gtdb_species": "s__UBA2250 sp011330945",
                "ani": 77.1595,
                "matched_fragments": 132,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__UBA2250",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018062105.1",
                "gtdb_species": "s__Sterolibacterium sp018062105",
                "ani": 77.0196,
                "matched_fragments": 86,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sterolibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.77",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018828385.1",
                "gtdb_species": "s__Azonexus sp018828385",
                "ani": 76.666,
                "matched_fragments": 83,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004345725.1",
                "gtdb_species": "s__Crenobacter luteus",
                "ani": 76.5273,
                "matched_fragments": 74,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chromobacteriaceae;g__Crenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017302315.1",
                "gtdb_species": "s__Zoogloea sp017302315",
                "ani": 76.1276,
                "matched_fragments": 80,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Zoogloea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017307915.1",
                "gtdb_species": "s__SCN-69-89 sp017307915",
                "ani": 75.9664,
                "matched_fragments": 82,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCN-69-89",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Rhodocyclaceae",
        "g__JACRAR01",
        "s__"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Rhodocyclaceae",
        "g__JACRAR01",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Rhodocyclaceae",
        "JACRAR01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}