{
    "type": "genome",
    "identifier": "GCA_026399655.1",
    "organism": "Methylophilales bacterium",
    "title": "Methylophilales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026399655.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026402",
        "wgs_master": "JAPLQP000000000.1",
        "refseq_category": "na",
        "taxid": "2546201",
        "species_taxid": "2546201",
        "organism_name": "Methylophilales bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0818_WC55_MAG_43_20",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2639965v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/399/655/GCA_026399655.1_ASM2639965v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylophilales bacterium"
        ],
        "sample_taxid": [
            "2546201"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.548 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1901788",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "146369",
        "N50 (bp)": "57084",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "1817",
        "Average Protein Length": "303.2",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylotenera versatilis",
                "strain": "strain=301",
                "accession": "GCA_000093025.1",
                "taxid": 1055487,
                "species_taxid": 1055487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5939,
                "matched_fragments": 166,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylotenera mobilis",
                "strain": "strain=JLW8",
                "accession": "GCA_000023705.1",
                "taxid": 359408,
                "species_taxid": 359408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2025,
                "matched_fragments": 129,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylotenera oryzisoli",
                "strain": "strain=La3113",
                "accession": "GCA_004661485.1",
                "taxid": 2080758,
                "species_taxid": 2080758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6773,
                "matched_fragments": 141,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903838125.1",
                "gtdb_species": "s__Methylotenera sp903838125",
                "ani": 96.5951,
                "matched_fragments": 451,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903882525.1",
                "gtdb_species": "s__Methylotenera sp903882525",
                "ani": 93.0622,
                "matched_fragments": 378,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCA_903860085.1",
                "gtdb_species": "s__Methylotenera sp903860085",
                "ani": 92.6787,
                "matched_fragments": 280,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903846555.1",
                "gtdb_species": "s__Methylotenera sp903846555",
                "ani": 79.2593,
                "matched_fragments": 173,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002429455.1",
                "gtdb_species": "s__Methylotenera sp002429455",
                "ani": 78.6255,
                "matched_fragments": 163,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000093025.1",
                "gtdb_species": "s__Methylotenera versatilis",
                "ani": 78.5692,
                "matched_fragments": 167,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009693255.1",
                "gtdb_species": "s__Methylotenera sp009693255",
                "ani": 78.4839,
                "matched_fragments": 144,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013141075.1",
                "gtdb_species": "s__Methylotenera sp013141075",
                "ani": 78.3475,
                "matched_fragments": 158,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.66",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903926935.1",
                "gtdb_species": "s__Methylotenera sp903926935",
                "ani": 78.3441,
                "matched_fragments": 186,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014378495.1",
                "gtdb_species": "s__Methylotenera sp014378495",
                "ani": 78.295,
                "matched_fragments": 121,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141425.1",
                "gtdb_species": "s__Methylotenera sp013141425",
                "ani": 78.1338,
                "matched_fragments": 139,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903854305.1",
                "gtdb_species": "s__Methylotenera sp903854305",
                "ani": 78.0064,
                "matched_fragments": 149,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__Methylotenera",
        "s__Methylotenera sp903838125"
    ],
    "_genome_taxon": [
        "Methylophilales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__Methylotenera",
        "s__Methylotenera sp903838125",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Methylophilaceae",
        "Methylotenera",
        "Methylotenera",
        "sp903838125"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}