{ "type": "genome", "identifier": "GCA_026399895.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026399895.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026389", "wgs_master": "JAPLQC000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC45_MAG_55_9", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2639989v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/399/895/GCA_026399895.1_ASM2639989v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.791 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2754167", "Number of Sequences": "88", "Longest Sequences (bp)": "157699", "N50 (bp)": "43173", "Gap Ratio (%)": "0.051740", "GCcontent (%)": "54.8", "Number of CDSs": "2575", "Average Protein Length": "309.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oxalicibacterium flavum", "strain": "strain=CCM 7086", "accession": "GCA_014635065.1", "taxid": 179467, "species_taxid": 179467, "relation_to_type": "type", "validated": true, "ani": 77.3194, "matched_fragments": 123, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 77.1974, "matched_fragments": 122, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 77.0842, "matched_fragments": 136, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum hiltneri", "strain": "strain=N3", "accession": "GCA_001267925.1", "taxid": 341045, "species_taxid": 341045, "relation_to_type": "type", "validated": true, "ani": 77.0387, "matched_fragments": 123, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 77.0333, "matched_fragments": 114, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 77.022, "matched_fragments": 123, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum massiliense", "strain": "strain=JC206", "accession": "GCA_000312045.1", "taxid": 1465823, "species_taxid": 1465823, "relation_to_type": "type", "validated": true, "ani": 77.0103, "matched_fragments": 113, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum autotrophicum", "strain": "strain=TSA66", "accession": "GCA_000818395.1", "taxid": 709839, "species_taxid": 709839, "relation_to_type": "type", "validated": true, "ani": 76.9579, "matched_fragments": 121, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia 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98, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella violacea", "strain": "strain=CECT 8897", "accession": "GCA_014191875.1", "taxid": 1715466, "species_taxid": 1715466, "relation_to_type": "type", "validated": true, "ani": 76.7215, "matched_fragments": 85, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, "relation_to_type": "type", "validated": true, "ani": 76.6929, "matched_fragments": 87, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum autotrophicum", "strain": "strain=IAM 14942", "accession": "GCA_001189915.1", "taxid": 180195, "species_taxid": 180195, "relation_to_type": "type", "validated": true, "ani": 76.6319, "matched_fragments": 111, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella plicata", "strain": "strain=KCTC 12344", "accession": "GCA_014651435.1", "taxid": 321984, "species_taxid": 321984, "relation_to_type": "type", "validated": true, "ani": 76.6208, "matched_fragments": 88, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium terreum", "strain": "strain=CGMCC 1.10998", "accession": "GCA_014636315.1", "taxid": 1224302, "species_taxid": 1224302, "relation_to_type": "type", "validated": true, "ani": 76.4633, "matched_fragments": 70, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas fonticola", "strain": "strain=DSM 18555", "accession": "GCA_004361795.1", "taxid": 303380, "species_taxid": 303380, "relation_to_type": "type", "validated": true, "ani": 76.4527, "matched_fragments": 87, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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