{ "type": "genome", "identifier": "GCA_026400255.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026400255.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026370", "wgs_master": "JAPLPJ000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC50_MAG_69_7", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2640025v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/400/255/GCA_026400255.1_ASM2640025v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.167 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4283931", "Number of Sequences": "494", "Longest Sequences (bp)": "72258", "N50 (bp)": "14655", "Gap Ratio (%)": "0.123251", "GCcontent (%)": "69.1", "Number of CDSs": "3598", "Average Protein Length": "313.4", "Coding Ratio (%)": "79.0", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lautropia mirabilis", "strain": "strain=NCTC12852", "accession": "GCA_900637555.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 77.5851, "matched_fragments": 178, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 77.4971, "matched_fragments": 329, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia mirabilis", "strain": "strain=ATCC 51599", "accession": "GCA_000186425.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 77.4944, "matched_fragments": 182, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 77.4458, "matched_fragments": 333, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 77.4195, "matched_fragments": 334, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 77.2158, "matched_fragments": 228, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.1086, "matched_fragments": 276, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.1051, "matched_fragments": 282, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia dentalis", "strain": "strain=KCOM 2505", "accession": "GCA_003892345.1", "taxid": 2490857, "species_taxid": 2490857, "relation_to_type": "type", "validated": true, "ani": 77.1005, "matched_fragments": 181, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 77.0731, "matched_fragments": 251, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum robiniae", "strain": "strain=HZ10", "accession": "GCA_002213415.1", "taxid": 2014887, "species_taxid": 2014887, "relation_to_type": "type", "validated": true, "ani": 76.9705, "matched_fragments": 313, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 76.905, "matched_fragments": 270, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 76.9032, "matched_fragments": 271, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 76.7895, "matched_fragments": 285, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 76.762, "matched_fragments": 219, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_001040945.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 76.7164, "matched_fragments": 246, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas alkaliphilus", "strain": "strain=YIM 72238", "accession": "GCA_007556595.1", "taxid": 2588942, "species_taxid": 2588942, "relation_to_type": "type", "validated": true, "ani": 76.7135, "matched_fragments": 207, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6633, "matched_fragments": 266, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 76.6517, "matched_fragments": 266, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 76.6409, "matched_fragments": 280, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 76.6366, "matched_fragments": 344, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 76.6162, "matched_fragments": 280, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 76.6123, "matched_fragments": 401, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 76.603, "matched_fragments": 247, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 76.59, "matched_fragments": 308, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas nitroreducens", "strain": "strain=SC-089", "accession": "GCA_002209565.1", "taxid": 683354, "species_taxid": 683354, "relation_to_type": "type", "validated": true, "ani": 76.5695, "matched_fragments": 205, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 76.4868, "matched_fragments": 318, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.483, "matched_fragments": 365, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella callida", "strain": "strain=DN04", "accession": "GCA_004614165.1", "taxid": 2561932, "species_taxid": 2561932, "relation_to_type": "type", "validated": true, "ani": 76.4788, "matched_fragments": 265, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella aquatica", "strain": "strain=FT127W", "accession": "GCA_009857595.1", "taxid": 2660641, "species_taxid": 2660641, "relation_to_type": "type", "validated": true, "ani": 76.3695, "matched_fragments": 276, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=LMG 23618", "accession": "GCA_900608545.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 76.2695, "matched_fragments": 242, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella dendranthematis", "strain": "strain=AF9R3", "accession": "GCA_012849375.1", "taxid": 2728021, "species_taxid": 2728021, "relation_to_type": "type", "validated": true, "ani": 76.2, "matched_fragments": 219, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rhizosphaerae", "strain": "strain=NEAU-GH312", "accession": "GCA_016093545.1", "taxid": 2784389, "species_taxid": 2784389, "relation_to_type": "type", "validated": true, "ani": 76.1691, "matched_fragments": 236, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia pinisoli", "strain": "strain=JCM 31316", "accession": "GCA_024753285.1", "taxid": 1772194, "species_taxid": 1772194, "relation_to_type": "type", "validated": true, "ani": 76.1247, "matched_fragments": 217, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella albidiflava", "strain": "strain=DSM 17472", "accession": "GCA_004322755.1", "taxid": 321983, "species_taxid": 321983, "relation_to_type": "type", "validated": true, "ani": 76.1174, "matched_fragments": 278, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararobbsia alpina", "strain": "strain=LMG 28138", "accession": "GCA_902859895.1", "taxid": 621374, "species_taxid": 621374, "relation_to_type": "type", "validated": true, "ani": 75.9326, "matched_fragments": 144, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903934295.1", "gtdb_species": 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