{
    "type": "genome",
    "identifier": "GCA_026400415.1",
    "organism": "Afipia sp.",
    "title": "Afipia sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026400415.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026361",
        "wgs_master": "JAPLPA000000000.1",
        "refseq_category": "na",
        "taxid": "1871052",
        "species_taxid": "1871052",
        "organism_name": "Afipia sp.",
        "infraspecific_name": "",
        "isolate": "LacPavin_0419_WC53_MAG_58_6",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2640041v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/400/415/GCA_026400415.1_ASM2640041v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Afipia sp."
        ],
        "sample_taxid": [
            "1871052"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.013 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.45,
        "contamination": 8.33,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3551513",
        "Number of Sequences": "605",
        "Longest Sequences (bp)": "38835",
        "N50 (bp)": "8340",
        "Gap Ratio (%)": "0.237335",
        "GCcontent (%)": "57.7",
        "Number of CDSs": "3152",
        "Average Protein Length": "263.6",
        "Coding Ratio (%)": "70.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Afipia broomeae",
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                "accession": "GCA_000314675.2",
                "taxid": 56946,
                "species_taxid": 56946,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4115,
                "matched_fragments": 440,
                "total_fragments": 848,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Afipia massiliensis",
                "strain": "strain=DSM 17498",
                "accession": "GCA_014203115.1",
                "taxid": 211460,
                "species_taxid": 211460,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Afipia birgiae",
                "strain": "strain=34632",
                "accession": "GCA_000308295.2",
                "taxid": 151414,
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                "relation_to_type": "type",
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                "ani": 79.2082,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Afipia clevelandensis",
                "strain": "strain=ATCC 49720",
                "accession": "GCA_000336555.1",
                "taxid": 1034,
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                "ani": 79.03,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium sediminis",
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                "accession": "GCA_018736085.1",
                "taxid": 2840469,
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                "validated": true,
                "ani": 78.0476,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium elkanii",
                "strain": "strain=USDA 76",
                "accession": "GCA_023278185.1",
                "taxid": 29448,
                "species_taxid": 29448,
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                "ani": 77.9021,
                "matched_fragments": 309,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium lablabi",
                "strain": "strain=CCBAU 23086",
                "accession": "GCA_001440475.1",
                "taxid": 722472,
                "species_taxid": 722472,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8785,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopseudomonas rhenobacensis",
                "strain": "strain=DSM 12706",
                "accession": "GCA_014203125.1",
                "taxid": 87461,
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                "ani": 77.8568,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Afipia carboxidovorans",
                "strain": "strain=OM5; ATCC 49405",
                "accession": "GCA_000021365.1",
                "taxid": 40137,
                "species_taxid": 40137,
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                "ani": 77.8527,
                "matched_fragments": 256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopseudomonas pseudopalustris",
                "strain": "strain=DSM 123",
                "accession": "GCA_900110435.1",
                "taxid": 1513892,
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                "ani": 77.8506,
                "matched_fragments": 273,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium betae",
                "strain": "strain=CECT 5829",
                "accession": "GCA_024806875.1",
                "taxid": 244734,
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                "relation_to_type": "type",
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                "ani": 77.8446,
                "matched_fragments": 284,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium valentinum",
                "strain": "strain=LmjM3",
                "accession": "GCA_001440405.1",
                "taxid": 1518501,
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                "ani": 77.8054,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Bradyrhizobium manausense",
                "strain": "strain=BR 3351",
                "accession": "GCA_001440035.1",
                "taxid": 989370,
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                "ani": 77.7741,
                "matched_fragments": 271,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium aeschynomenes",
                "strain": "strain=83002",
                "accession": "GCA_013178945.1",
                "taxid": 2734909,
                "species_taxid": 2734909,
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                "ani": 77.7266,
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                "status": "below_threshold"
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            {
                "organism_name": "Bradyrhizobium australiense",
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                "accession": "GCA_013114825.1",
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                "ani": 77.6768,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Bradyrhizobium cajani",
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                "accession": "GCA_009759665.1",
                "taxid": 1928661,
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                "ani": 77.6005,
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                "status": "below_threshold"
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            {
                "organism_name": "Nitrobacter hamburgensis",
                "strain": "strain=X14",
                "accession": "GCA_000013885.1",
                "taxid": 912,
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                "ani": 77.5845,
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                "status": "below_threshold"
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                "accession": "GCA_016201045.1",
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                "accession": "GCF_018130145.1",
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            },
            {
                "accession": "GCA_017305665.1",
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                "min_intra_species_ani": "N/A",
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__Xanthobacteraceae",
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__Xanthobacteraceae",
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        "s__Afipia sp026400415",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
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        "Xanthobacteraceae",
        "Afipia",
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        "sp026400415"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}