{ "type": "genome", "identifier": "GCA_026400435.1", "organism": "Hyphomicrobiales bacterium", "title": "Hyphomicrobiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026400435.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026360", "wgs_master": "JAPLOZ000000000.1", "refseq_category": "na", "taxid": "1909294", "species_taxid": "1909294", "organism_name": "Hyphomicrobiales bacterium", "infraspecific_name": "", "isolate": "LacPavin_0920_WC90_MAG_64_12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2640043v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/400/435/GCA_026400435.1_ASM2640043v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Hyphomicrobiales bacterium" ], "sample_taxid": [ "1909294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.86, "contamination": 10.42, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3878522", "Number of Sequences": "121", "Longest Sequences (bp)": "156716", "N50 (bp)": "52972", "Gap Ratio (%)": "0.000567", "GCcontent (%)": "63.6", "Number of CDSs": "3646", "Average Protein Length": "309.7", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 79.9887, "matched_fragments": 656, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 79.9242, "matched_fragments": 647, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 79.8923, "matched_fragments": 658, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 79.8608, "matched_fragments": 591, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium caraganae", "strain": "strain=LMG 24397", "accession": "GCA_016836705.1", "taxid": 483206, "species_taxid": 483206, "relation_to_type": "type", "validated": true, "ani": 79.8518, "matched_fragments": 645, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 79.8459, "matched_fragments": 582, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 79.8391, "matched_fragments": 637, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 79.8205, "matched_fragments": 647, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium loti", "strain": "strain=DSM 2626", "accession": "GCA_003148495.1", "taxid": 381, "species_taxid": 381, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8168, "matched_fragments": 630, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 79.8127, "matched_fragments": 678, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 79.8036, "matched_fragments": 697, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 79.7866, "matched_fragments": 674, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 79.74, "matched_fragments": 618, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 79.7348, "matched_fragments": 597, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 79.7325, "matched_fragments": 605, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 79.7218, "matched_fragments": 575, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 79.6341, "matched_fragments": 615, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 79.5841, "matched_fragments": 605, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 79.554, "matched_fragments": 590, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 79.5423, "matched_fragments": 619, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, "species_taxid": 1776730, "relation_to_type": "type", "validated": true, "ani": 79.5294, "matched_fragments": 597, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.1638, "matched_fragments": 523, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.7702, "matched_fragments": 464, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.761, "matched_fragments": 465, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium defluvii", "strain": "strain=DSM 11603", "accession": "GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 78.7564, "matched_fragments": 409, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 76.1764, "matched_fragments": 113, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas naejangsanensis", "strain": "strain=DSM 23858", "accession": "GCA_000421705.1", "taxid": 588932, "species_taxid": 588932, "relation_to_type": "type", "validated": true, "ani": 75.9241, "matched_fragments": 85, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas johnsonii", "strain": "strain=MHS-2", "accession": "GCA_000685275.1", "taxid": 81031, "species_taxid": 81031, "relation_to_type": "type", "validated": true, "ani": 75.8369, "matched_fragments": 59, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas oceanitis", "strain": "strain=SCH89", "accession": "GCA_000685295.1", "taxid": 81033, "species_taxid": 81033, "relation_to_type": "type", "validated": true, "ani": 75.8004, "matched_fragments": 50, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.86, "contamination": 10.42, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003666685.1", "gtdb_species": "s__RCIZ01 sp003666685", "ani": 81.8902, "matched_fragments": 809, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018823835.1", "gtdb_species": "s__RCIZ01 sp018823835", "ani": 80.5005, "matched_fragments": 702, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.96", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_016793485.1", "gtdb_species": "s__RCIZ01 sp016793485", "ani": 80.411, "matched_fragments": 746, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016756535.1", "gtdb_species": "s__Mesorhizobium sp016756535", "ani": 80.277, "matched_fragments": 671, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004791025.1", "gtdb_species": "s__Mesorhizobium sp004791025", "ani": 80.2154, "matched_fragments": 659, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_001686985.1", "gtdb_species": "s__Mesorhizobium amorphae_B", "ani": 80.0617, "matched_fragments": 673, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0866, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003952505.1", "gtdb_species": "s__Mesorhizobium sp003952505", "ani": 79.9756, "matched_fragments": 646, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_003952385.1", "gtdb_species": "s__Mesorhizobium sp003952385", "ani": 79.94, "matched_fragments": 628, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003952485.1", "gtdb_species": "s__Mesorhizobium sp003952485", "ani": 79.8953, "matched_fragments": 659, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003289965.1", "gtdb_species": "s__Mesorhizobium atlanticum", "ani": 79.876, "matched_fragments": 660, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000009625.1", "gtdb_species": "s__Mesorhizobium japonicum", "ani": 79.8509, "matched_fragments": 636, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_004801285.1", "gtdb_species": "s__Mesorhizobium composti", "ani": 79.8423, "matched_fragments": 592, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.99", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001510895.1", "gtdb_species": "s__Mesorhizobium loti_A", "ani": 79.8233, "matched_fragments": 635, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006439515.1", "gtdb_species": "s__Mesorhizobium sp006439515", "ani": 79.8132, "matched_fragments": 624, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006442795.1", "gtdb_species": "s__Mesorhizobium sp006442795", "ani": 79.809, "matched_fragments": 635, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016756495.1", "gtdb_species": "s__Mesorhizobium sp016756495", "ani": 79.8021, "matched_fragments": 679, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003353565.1", "gtdb_species": "s__Mesorhizobium sp003353565", "ani": 79.7863, "matched_fragments": 687, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001854785.1", "gtdb_species": "s__Mesorhizobium sp001854785", "ani": 79.7583, "matched_fragments": 614, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017306545.1", "gtdb_species": "s__Mesorhizobium sp017306545", "ani": 79.647, "matched_fragments": 576, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011045115.1", "gtdb_species": "s__Pseudaminobacter zhangyensis", "ani": 79.5125, "matched_fragments": 599, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905339215.1", "gtdb_species": "s__DUSC01 sp008933895", "ani": 79.3011, "matched_fragments": 530, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__DUSC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014860725.1", "gtdb_species": "s__Aquamicrobium_A sp014860725", "ani": 79.1323, "matched_fragments": 282, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012842935.1", "gtdb_species": "s__DUSC01 sp012842935", "ani": 78.9532, "matched_fragments": 479, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__DUSC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004363725.1", "gtdb_species": "s__Mesorhizobium defluvii", "ani": 78.7506, "matched_fragments": 409, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002483135.1", "gtdb_species": "s__UBA7672 sp002483135", "ani": 77.4589, "matched_fragments": 83, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__UBA7672", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002280725.1", "gtdb_species": "s__UBA7672 sp002280725", "ani": 77.2284, "matched_fragments": 85, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__UBA7672", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016125405.1", "gtdb_species": "s__UBA7672 sp016125405", "ani": 76.3977, "matched_fragments": 68, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__UBA7672", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017792365.1", "gtdb_species": "s__IH12 sp017792365", "ani": 76.3804, "matched_fragments": 68, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__IH12", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016714495.1", "gtdb_species": "s__UBA7672 sp016714495", "ani": 76.306, "matched_fragments": 82, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__UBA7672", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Rhizobiaceae", "g__RCIZ01", "s__RCIZ01 sp026400435" ], "_genome_taxon": [ "Hyphomicrobiales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Rhizobiaceae", "g__RCIZ01", "s__RCIZ01 sp026400435", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhizobiales", "Rhizobiaceae", "RCIZ01", "RCIZ01", "sp026400435" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }