{ "type": "genome", "identifier": "GCA_026400795.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026400795.1", "bioproject": "PRJNA852163", "biosample": "SAMN30026344", "wgs_master": "JAPLOJ000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "LacPavin_0818_WC50_MAG_62_8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/24", "asm_name": "ASM2640079v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/400/795/GCA_026400795.1_ASM2640079v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-24", "dateModified": "2022-11-24", "datePublished": "2022-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Besse-et-Saint-Anastaise, Lac Pavin" ], "sample_host_location_id": [], "data_size": "0.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.43, "contamination": 12.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3396951", "Number of Sequences": "450", "Longest Sequences (bp)": "54249", "N50 (bp)": "11091", "Gap Ratio (%)": "0.051870", "GCcontent (%)": "61.7", "Number of CDSs": "3017", "Average Protein Length": "294.6", "Coding Ratio (%)": "78.5", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 76.8387, "matched_fragments": 213, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.6689, "matched_fragments": 251, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 76.5732, "matched_fragments": 257, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.4784, "matched_fragments": 233, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.4553, "matched_fragments": 181, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": "GCA_019024325.1", "taxid": 430521, "species_taxid": 430521, "relation_to_type": "type", "validated": true, "ani": 76.4379, "matched_fragments": 207, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas frigidaquae", "strain": "strain=JCM 15073", "accession": "GCA_012163145.1", "taxid": 487318, "species_taxid": 487318, "relation_to_type": "type", "validated": true, "ani": 76.3894, "matched_fragments": 235, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.2989, "matched_fragments": 140, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.1753, "matched_fragments": 182, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 76.1568, "matched_fragments": 184, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 75.8828, "matched_fragments": 97, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 75.8666, "matched_fragments": 102, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 75.8532, "matched_fragments": 103, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=ATCC BAA-691", "accession": "GCA_000518625.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 75.8128, "matched_fragments": 97, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, 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