{
    "type": "genome",
    "identifier": "GCA_026400875.1",
    "organism": "Planctomycetales bacterium",
    "title": "Planctomycetales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026400875.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026336",
        "wgs_master": "JAPLOB000000000.1",
        "refseq_category": "na",
        "taxid": "2053591",
        "species_taxid": "2053591",
        "organism_name": "Planctomycetales bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0818_WC50_MAG_54_10",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2640087v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/400/875/GCA_026400875.1_ASM2640087v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planctomycetales bacterium"
        ],
        "sample_taxid": [
            "2053591"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.732 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6029387",
        "Number of Sequences": "212",
        "Longest Sequences (bp)": "267046",
        "N50 (bp)": "54105",
        "Gap Ratio (%)": "0.010250",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "4504",
        "Average Protein Length": "365.7",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fuerstiella marisgermanici",
                "strain": "strain=NH11",
                "accession": "GCA_001983935.1",
                "taxid": 1891926,
                "species_taxid": 1891926,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4364,
                "matched_fragments": 67,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003670925.1",
                "gtdb_species": "s__SXXK01 sp003670925",
                "ani": 99.08,
                "matched_fragments": 1591,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003669615.1",
                "gtdb_species": "s__SXXK01 sp003669615",
                "ani": 76.808,
                "matched_fragments": 104,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903871805.1",
                "gtdb_species": "s__SXXK01 sp903871805",
                "ani": 76.5642,
                "matched_fragments": 79,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016795145.1",
                "gtdb_species": "s__SXXK01 sp016795145",
                "ani": 76.0091,
                "matched_fragments": 135,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903896675.1",
                "gtdb_species": "s__SXXK01 sp903896675",
                "ani": 75.6789,
                "matched_fragments": 78,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_005791255.1",
                "gtdb_species": "s__SXXK01 sp005791255",
                "ani": 75.649,
                "matched_fragments": 59,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903924405.1",
                "gtdb_species": "s__SXXK01 sp903924405",
                "ani": 75.562,
                "matched_fragments": 75,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.71",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001983935.1",
                "gtdb_species": "s__Fuerstia marisgermanicae",
                "ani": 75.4528,
                "matched_fragments": 66,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Fuerstia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.083,
        "cell_length": 0.139,
        "doubling_h": 1.117,
        "growth_tmp": 28.294,
        "optimum_tmp": 27.699,
        "optimum_ph": 6.091,
        "genome_size": 7406693.402,
        "gc_content": 58.084,
        "coding_genes": 5540.533,
        "rRNA16S_genes": 2.5,
        "tRNA_genes": 57.7,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.75,
        "range_salinity": 1.0,
        "facultative_respiration": 0.058,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.941,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.1,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.714,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.285,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Planctomycetales",
        "f__Planctomycetaceae",
        "g__SXXK01",
        "s__SXXK01 sp003670925"
    ],
    "_genome_taxon": [
        "Planctomycetales",
        "bacterium",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Planctomycetales",
        "f__Planctomycetaceae",
        "g__SXXK01",
        "s__SXXK01 sp003670925",
        "Bacteria",
        "Planctomycetota",
        "Planctomycetia",
        "Planctomycetales",
        "Planctomycetaceae",
        "SXXK01",
        "SXXK01",
        "sp003670925"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}