{
    "type": "genome",
    "identifier": "GCA_026401035.1",
    "organism": "Planctomycetia bacterium",
    "title": "Planctomycetia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026401035.1",
        "bioproject": "PRJNA852163",
        "biosample": "SAMN30026326",
        "wgs_master": "JAPLNR000000000.1",
        "refseq_category": "na",
        "taxid": "2052181",
        "species_taxid": "2052181",
        "organism_name": "Planctomycetia bacterium",
        "infraspecific_name": "",
        "isolate": "LacPavin_0818_WC50_MAG_66_15",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/24",
        "asm_name": "ASM2640103v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/401/035/GCA_026401035.1_ASM2640103v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-24",
    "dateModified": "2022-11-24",
    "datePublished": "2022-11-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planctomycetia bacterium"
        ],
        "sample_taxid": [
            "2052181"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Besse-et-Saint-Anastaise, Lac Pavin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.043 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3771210",
        "Number of Sequences": "82",
        "Longest Sequences (bp)": "222959",
        "N50 (bp)": "90588",
        "Gap Ratio (%)": "0.004137",
        "GCcontent (%)": "66.3",
        "Number of CDSs": "3007",
        "Average Protein Length": "361.6",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudobythopirellula maris",
                "strain": "strain=Mal64",
                "accession": "GCA_007859945.1",
                "taxid": 2527991,
                "species_taxid": 2527991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5157,
                "matched_fragments": 129,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Botrimarina colliarenosi",
                "strain": "strain=Pla108",
                "accession": "GCA_007859955.1",
                "taxid": 2528001,
                "species_taxid": 2528001,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2282,
                "matched_fragments": 120,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacipirellula parvula",
                "strain": "strain=PX69",
                "accession": "GCA_009177095.1",
                "taxid": 2650471,
                "species_taxid": 2650471,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1909,
                "matched_fragments": 120,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas polymericola",
                "strain": "strain=Pla123a",
                "accession": "GCA_007859935.1",
                "taxid": 2528002,
                "species_taxid": 2528002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1245,
                "matched_fragments": 163,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Botrimarina hoheduenensis",
                "strain": "strain=Pla111",
                "accession": "GCA_007859815.1",
                "taxid": 2528000,
                "species_taxid": 2528000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1086,
                "matched_fragments": 67,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas corsicana",
                "strain": "strain=KOR34",
                "accession": "GCA_007859765.1",
                "taxid": 1938618,
                "species_taxid": 1938618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1041,
                "matched_fragments": 138,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pirellulimonas nuda",
                "strain": "strain=Pla175",
                "accession": "GCA_007750855.1",
                "taxid": 2528009,
                "species_taxid": 2528009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0625,
                "matched_fragments": 124,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacipirellula limnantheis",
                "strain": "strain=I41",
                "accession": "GCA_007746075.1",
                "taxid": 2528024,
                "species_taxid": 2528024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.757,
                "matched_fragments": 112,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisphaera giovannonii",
                "strain": "strain=OJF2",
                "accession": "GCA_008087625.1",
                "taxid": 406548,
                "species_taxid": 406548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3459,
                "matched_fragments": 164,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseiconus nitratireducens",
                "strain": "strain=JC645",
                "accession": "GCA_008629675.1",
                "taxid": 2605748,
                "species_taxid": 2605748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3157,
                "matched_fragments": 53,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia mallei",
                "strain": "strain=ATCC 23344",
                "accession": "GCA_000011705.1",
                "taxid": 13373,
                "species_taxid": 13373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9432,
                "matched_fragments": 83,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia pseudomallei",
                "strain": "strain=ATCC 23343",
                "accession": "GCA_001182285.1",
                "taxid": 28450,
                "species_taxid": 28450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9186,
                "matched_fragments": 95,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis subsp. mesacidophila",
                "strain": "strain=ATCC 31433",
                "accession": "GCA_002362295.1",
                "taxid": 265293,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8718,
                "matched_fragments": 90,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia caballeronis",
                "strain": "strain=LMG 26416",
                "accession": "GCA_900109675.1",
                "taxid": 416943,
                "species_taxid": 416943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7989,
                "matched_fragments": 85,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia caballeronis",
                "strain": "strain=TNe-841",
                "accession": "GCA_900104845.1",
                "taxid": 416943,
                "species_taxid": 416943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7982,
                "matched_fragments": 85,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum oleiclasticum",
                "strain": "strain=RWY-5-1-1",
                "accession": "GCA_013423485.1",
                "taxid": 2735135,
                "species_taxid": 2735135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7089,
                "matched_fragments": 86,
                "total_fragments": 1217,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_010027105.1",
                "gtdb_species": "s__RGVT01 sp010027105",
                "ani": 80.3977,
                "matched_fragments": 425,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__RGVT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009926295.1",
                "gtdb_species": "s__RGVT01 sp009926295",
                "ani": 80.2489,
                "matched_fragments": 480,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__RGVT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009923125.1",
                "gtdb_species": "s__RGVT01 sp009923125",
                "ani": 80.0053,
                "matched_fragments": 383,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__RGVT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018970605.1",
                "gtdb_species": "s__QWPN01 sp018970605",
                "ani": 79.6632,
                "matched_fragments": 405,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903831155.1",
                "gtdb_species": "s__QWPN01 sp903831155",
                "ani": 79.5742,
                "matched_fragments": 476,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003670825.1",
                "gtdb_species": "s__QWPN01 sp003670825",
                "ani": 79.4891,
                "matched_fragments": 290,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003669255.1",
                "gtdb_species": "s__QWPN01 sp003669255",
                "ani": 79.3169,
                "matched_fragments": 252,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014192425.1",
                "gtdb_species": "s__QWPN01 sp014192425",
                "ani": 79.2614,
                "matched_fragments": 523,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903958265.1",
                "gtdb_species": "s__QWPN01 sp903958265",
                "ani": 79.2446,
                "matched_fragments": 382,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016872925.1",
                "gtdb_species": "s__QWPN01 sp016872925",
                "ani": 79.2122,
                "matched_fragments": 475,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903919035.1",
                "gtdb_species": "s__QWPN01 sp903919035",
                "ani": 79.1606,
                "matched_fragments": 434,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_005789975.1",
                "gtdb_species": "s__QWPN01 sp005789975",
                "ani": 79.1369,
                "matched_fragments": 391,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003671185.1",
                "gtdb_species": "s__QWPN01 sp003671185",
                "ani": 79.0985,
                "matched_fragments": 418,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903951635.1",
                "gtdb_species": "s__QWOP01 sp903951635",
                "ani": 78.3232,
                "matched_fragments": 443,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903949225.1",
                "gtdb_species": "s__QWOP01 sp903949225",
                "ani": 78.1325,
                "matched_fragments": 339,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWOP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903885565.1",
                "gtdb_species": "s__CAISJI01 sp903885565",
                "ani": 78.0394,
                "matched_fragments": 412,
                "total_fragments": 1217,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__CAISJI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__UBA1268",
        "g__RGVT01",
        "s__RGVT01 sp026401035"
    ],
    "_genome_taxon": [
        "Planctomycetia",
        "bacterium",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__UBA1268",
        "g__RGVT01",
        "s__RGVT01 sp026401035",
        "Bacteria",
        "Planctomycetota",
        "Planctomycetia",
        "Pirellulales",
        "UBA1268",
        "RGVT01",
        "RGVT01",
        "sp026401035"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}