{ "type": "genome", "identifier": "GCA_026415745.1", "organism": "Rhodocyclaceae bacterium", "title": "Rhodocyclaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Universiti Teknologi Malaysia - Malaysia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026415745.1", "bioproject": "PRJEB4990", "biosample": "SAMN30305171", "wgs_master": "JAOAGM000000000.1", "refseq_category": "na", "taxid": "1898103", "species_taxid": "1898103", "organism_name": "Rhodocyclaceae bacterium", "infraspecific_name": "", "isolate": "SKW320", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "ASM2641574v1", "submitter": "Universiti Teknologi Malaysia - Malaysia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/415/745/GCA_026415745.1_ASM2641574v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodocyclaceae bacterium" ], "sample_taxid": [ "1898103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia: Sungkai, Perak" ], "sample_host_location_id": [], "data_size": "0.582 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.53, "contamination": 10.24, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2043870", "Number of Sequences": "950", "Longest Sequences (bp)": "25710", "N50 (bp)": "2648", "Gap Ratio (%)": "0.027105", "GCcontent (%)": "65.2", "Number of CDSs": "1458", "Average Protein Length": "231.6", "Coding Ratio (%)": "49.6", "Number of rRNAs": "0", "Number of tRNAs": "10", "Number of CRISPRs": "62" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 53.53, "contamination": 10.24, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011330945.1", "gtdb_species": "s__UBA2250 sp011330945", "ani": 81.2456, "matched_fragments": 81, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__UBA2250", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003966565.1", "gtdb_species": "s__UBA2250 sp003966565", "ani": 79.8035, "matched_fragments": 75, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__UBA2250", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002347285.1", "gtdb_species": "s__UBA2250 sp002347285", "ani": 79.789, "matched_fragments": 83, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__UBA2250", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016235165.1", "gtdb_species": "s__Sulfuritalea sp016235165", "ani": 77.6795, "matched_fragments": 55, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006218025.1", "gtdb_species": "s__Sulfuritalea sp006218025", "ani": 77.2899, "matched_fragments": 53, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.312, "cell_length": 0.097, "doubling_h": null, "growth_tmp": 30.687, "optimum_tmp": 32.625, "optimum_ph": 7.0, "genome_size": 3192380.0, "gc_content": 63.8, "coding_genes": 2918.0, "rRNA16S_genes": 2.0, "tRNA_genes": 53.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.285, "anaerobic_respiration": 0.285, "aerobic_respiration": 0.428, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.75, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.25, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Rhodocyclaceae", "g__Sulfuricystis", "s__" ], "_genome_taxon": [ "Rhodocyclaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Rhodocyclaceae", "g__Sulfuricystis", "s__", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Rhodocyclaceae", "Sulfuricystis", "s", "", "" ], "_meo": [ { "id": "MEO_0000029", "label": "hot spring" }, { "id": "MEO_0000730", "label": "alkaline hot spring" } ], "quality": 1, "quality_label": "\u2b50\ufe0f" }