{
    "type": "genome",
    "identifier": "GCA_026419735.1",
    "organism": "Ignavibacterium sp.",
    "title": "Ignavibacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Universiti Teknologi Malaysia - Malaysia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026419735.1",
        "bioproject": "PRJEB4990",
        "biosample": "SAMN30304971",
        "wgs_master": "JANZYU000000000.1",
        "refseq_category": "na",
        "taxid": "2651167",
        "species_taxid": "2651167",
        "organism_name": "Ignavibacterium sp.",
        "infraspecific_name": "",
        "isolate": "SKW101",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/27",
        "asm_name": "ASM2641973v1",
        "submitter": "Universiti Teknologi Malaysia - Malaysia",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/419/735/GCA_026419735.1_ASM2641973v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-27",
    "dateModified": "2022-11-27",
    "datePublished": "2022-11-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ignavibacterium sp."
        ],
        "sample_taxid": [
            "2651167"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Malaysia: Sungkai, Perak"
        ],
        "sample_host_location_id": [],
        "data_size": "0.798 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.93,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2877070",
        "Number of Sequences": "224",
        "Longest Sequences (bp)": "196394",
        "N50 (bp)": "19410",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.7",
        "Number of CDSs": "2357",
        "Average Protein Length": "340.2",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ignavibacterium album",
                "strain": "strain=JCM 16511",
                "accession": "GCA_000258405.1",
                "taxid": 591197,
                "species_taxid": 591197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9872,
                "matched_fragments": 174,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.93,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011329055.1",
                "gtdb_species": "s__Ignavibacterium album_B",
                "ani": 77.1485,
                "matched_fragments": 177,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000258405.1",
                "gtdb_species": "s__Ignavibacterium album",
                "ani": 77.0019,
                "matched_fragments": 173,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016222975.1",
                "gtdb_species": "s__Ignavibacterium album_C",
                "ani": 76.5329,
                "matched_fragments": 130,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011368355.1",
                "gtdb_species": "s__Ignavibacterium album_A",
                "ani": 76.4687,
                "matched_fragments": 183,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016709765.1",
                "gtdb_species": "s__IGN3 sp016709765",
                "ani": 75.9113,
                "matched_fragments": 97,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013285425.1",
                "gtdb_species": "s__IGN3 sp900696555",
                "ani": 75.8306,
                "matched_fragments": 75,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018335755.1",
                "gtdb_species": "s__JAGXRK01 sp018335755",
                "ani": 75.6146,
                "matched_fragments": 77,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__JAGXRK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002698995.1",
                "gtdb_species": "s__GCA-2698995 sp002698995",
                "ani": 75.256,
                "matched_fragments": 73,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Melioribacteraceae;g__GCA-2698995",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018818165.1",
                "gtdb_species": "s__1-14-2-50-31-20 sp018818165",
                "ani": 75.0032,
                "matched_fragments": 54,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Ignavibacteria;o__Ignavibacteriales;f__Melioribacteraceae;g__1-14-2-50-31-20",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.664,
        "cell_length": 0.628,
        "doubling_h": null,
        "growth_tmp": 45.0,
        "optimum_tmp": 45.0,
        "optimum_ph": 7.167,
        "genome_size": 3658997.75,
        "gc_content": 33.9,
        "coding_genes": 3129.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Ignavibacteria",
        "o__Ignavibacteriales",
        "f__Ignavibacteriaceae",
        "g__Ignavibacterium",
        "s__Ignavibacterium sp025056745"
    ],
    "_genome_taxon": [
        "Ignavibacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Ignavibacteria",
        "o__Ignavibacteriales",
        "f__Ignavibacteriaceae",
        "g__Ignavibacterium",
        "s__Ignavibacterium sp025056745",
        "Bacteria",
        "Bacteroidota",
        "Ignavibacteria",
        "Ignavibacteriales",
        "Ignavibacteriaceae",
        "Ignavibacterium",
        "Ignavibacterium",
        "sp025056745"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000730",
            "label": "alkaline hot spring"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}