{
    "type": "genome",
    "identifier": "GCA_026461505.1",
    "organism": "Beijerinckiaceae bacterium",
    "title": "Beijerinckiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026461505.1",
        "bioproject": "PRJNA526747",
        "biosample": "SAMN27925771",
        "wgs_master": "JAPJMW000000000.1",
        "refseq_category": "na",
        "taxid": "1978229",
        "species_taxid": "1978229",
        "organism_name": "Beijerinckiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "MAG11",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/28",
        "asm_name": "ASM2646150v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/461/505/GCA_026461505.1_ASM2646150v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-28",
    "dateModified": "2022-11-28",
    "datePublished": "2022-11-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Beijerinckiaceae bacterium"
        ],
        "sample_taxid": [
            "1978229"
        ],
        "sample_host_organism": [
            "Ephydatia muelleri"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Sooke River"
        ],
        "sample_host_location_id": [],
        "data_size": "0.775 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2699727",
        "Number of Sequences": "205",
        "Longest Sequences (bp)": "65059",
        "N50 (bp)": "21818",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.9",
        "Number of CDSs": "2447",
        "Average Protein Length": "309.4",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bosea robiniae",
                "strain": "strain=DSM 26672",
                "accession": "GCA_900102525.1",
                "taxid": 1036780,
                "species_taxid": 1036780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0038,
                "matched_fragments": 50,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alsobacter metallidurans",
                "strain": "strain=CGMCC 1.12214",
                "accession": "GCA_014636935.1",
                "taxid": 340221,
                "species_taxid": 340221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.933,
                "matched_fragments": 53,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus asaccharovorans",
                "strain": "strain=DSM 6462",
                "accession": "GCA_003201475.1",
                "taxid": 28210,
                "species_taxid": 28210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7605,
                "matched_fragments": 52,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus asaccharovorans",
                "strain": "strain=DSM 6462",
                "accession": "GCA_018398275.1",
                "taxid": 28210,
                "species_taxid": 28210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7123,
                "matched_fragments": 52,
                "total_fragments": 792,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903877935.1",
                "gtdb_species": "s__CAIUPE01 sp903877935",
                "ani": 82.4462,
                "matched_fragments": 522,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIUPE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_903900975.1",
                "gtdb_species": "s__CAIUPE01 sp903900975",
                "ani": 79.6219,
                "matched_fragments": 292,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIUPE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009921785.1",
                "gtdb_species": "s__CAIUPE01 sp009921785",
                "ani": 78.2914,
                "matched_fragments": 126,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIUPE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016870035.1",
                "gtdb_species": "s__CAIUPE01 sp016870035",
                "ani": 77.1563,
                "matched_fragments": 152,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIUPE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903930675.1",
                "gtdb_species": "s__CAIYZJ01 sp903930675",
                "ani": 76.9796,
                "matched_fragments": 73,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIYZJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009920595.1",
                "gtdb_species": "s__CAIUPE01 sp009920595",
                "ani": 76.9402,
                "matched_fragments": 104,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIUPE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019083985.1",
                "gtdb_species": "s__TNE-4 sp019083985",
                "ani": 76.7204,
                "matched_fragments": 96,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__TNE-4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018882635.1",
                "gtdb_species": "s__TNE-4 sp018882635",
                "ani": 76.3685,
                "matched_fragments": 88,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__TNE-4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002220095.1",
                "gtdb_species": "s__Bosea sp002220095",
                "ani": 75.8757,
                "matched_fragments": 51,
                "total_fragments": 792,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.158,
        "cell_length": 0.249,
        "doubling_h": null,
        "growth_tmp": 24.739,
        "optimum_tmp": 24.666,
        "optimum_ph": 5.7,
        "genome_size": 4276579.828,
        "gc_content": 59.617,
        "coding_genes": 3824.5,
        "rRNA16S_genes": 2.5,
        "tRNA_genes": 49.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.2,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.071,
        "aerobic_respiration": 0.928,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.2,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Beijerinckiaceae",
        "g__CAIUPE01",
        "s__CAIUPE01 sp026461505"
    ],
    "_genome_taxon": [
        "Beijerinckiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Beijerinckiaceae",
        "g__CAIUPE01",
        "s__CAIUPE01 sp026461505",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Beijerinckiaceae",
        "CAIUPE01",
        "CAIUPE01",
        "sp026461505"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        },
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}