{
    "type": "genome",
    "identifier": "GCA_026552875.1",
    "organism": "Candidatus Methanoperedens sp.",
    "title": "Candidatus Methanoperedens sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026552875.1",
        "bioproject": "PRJNA850006",
        "biosample": "SAMN31357809",
        "wgs_master": "JAPMTV000000000.1",
        "refseq_category": "na",
        "taxid": "2032688",
        "species_taxid": "2032688",
        "organism_name": "Candidatus Methanoperedens sp.",
        "infraspecific_name": "",
        "isolate": "Bioreactor 2 iso 2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/30",
        "asm_name": "ASM2655287v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/552/875/GCA_026552875.1_ASM2655287v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-30",
    "dateModified": "2022-11-30",
    "datePublished": "2022-11-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Methanoperedens sp."
        ],
        "sample_taxid": [
            "2032688"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Nijmegen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.946 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3312596",
        "Number of Sequences": "79",
        "Longest Sequences (bp)": "265978",
        "N50 (bp)": "71522",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.9",
        "Number of CDSs": "3552",
        "Average Protein Length": "265.6",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905339155.1",
                "gtdb_species": "s__Methanoperedens sp905339155",
                "ani": 99.9458,
                "matched_fragments": 1018,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002487355.1",
                "gtdb_species": "s__Methanoperedens sp002487355",
                "ani": 87.0441,
                "matched_fragments": 666,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902384525.1",
                "gtdb_species": "s__Methanoperedens sp902384525",
                "ani": 86.8906,
                "matched_fragments": 585,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012026795.1",
                "gtdb_species": "s__Methanoperedens sp012026795",
                "ani": 85.2347,
                "matched_fragments": 605,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003104905.1",
                "gtdb_species": "s__Methanoperedens sp003104905",
                "ani": 81.1859,
                "matched_fragments": 513,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902386255.1",
                "gtdb_species": "s__Methanoperedens sp902386255",
                "ani": 77.7034,
                "matched_fragments": 228,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859785.1",
                "gtdb_species": "s__Methanoperedens_A sp014859785",
                "ani": 77.3847,
                "matched_fragments": 81,
                "total_fragments": 1063,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanoperedenaceae",
        "g__Methanoperedens",
        "s__Methanoperedens sp905339155"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Methanoperedens",
        "sp.",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanoperedenaceae",
        "g__Methanoperedens",
        "s__Methanoperedens sp905339155",
        "Archaea",
        "Halobacteriota",
        "Methanosarcinia",
        "Methanosarcinales",
        "Methanoperedenaceae",
        "Methanoperedens",
        "Methanoperedens",
        "sp905339155"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}