{
    "type": "genome",
    "identifier": "GCA_026684255.1",
    "organism": "Buchnera aphidicola (Brevicoryne brassicae)",
    "title": "Buchnera aphidicola (Brevicoryne brassicae)",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Belarusian State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026684255.1",
        "bioproject": "PRJNA558881",
        "biosample": "SAMN31681002",
        "wgs_master": "",
        "refseq_category": "na",
        "taxid": "911343",
        "species_taxid": "9",
        "organism_name": "Buchnera aphidicola (Brevicoryne brassicae)",
        "infraspecific_name": "",
        "isolate": "BSU_Bre_2018",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/06",
        "asm_name": "ASM2668425v1",
        "submitter": "Belarusian State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/684/255/GCA_026684255.1_ASM2668425v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-06",
    "dateModified": "2022-12-06",
    "datePublished": "2022-12-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Buchnera aphidicola (Brevicoryne brassicae)"
        ],
        "sample_taxid": [
            "911343"
        ],
        "sample_host_organism": [
            "Brevicoryne brassicae"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belarus: Minsk"
        ],
        "sample_host_location_id": [],
        "data_size": "0.176 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "653855",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "643005",
        "N50 (bp)": "643005",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "25.0",
        "Number of CDSs": "601",
        "Average Protein Length": "321.4",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Buchnera aphidicola (Schizaphis graminum)",
                "strain": "strain=Sg (ex Schizaphis graminum)",
                "accession": "GCA_000007365.1",
                "taxid": 98794,
                "species_taxid": 9,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.5304,
                "matched_fragments": 168,
                "total_fragments": 216,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005082825.1",
                "gtdb_species": "s__Buchnera aphidicola_AK",
                "ani": 99.9613,
                "matched_fragments": 216,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005081185.1",
                "gtdb_species": "s__Buchnera aphidicola_AD",
                "ani": 86.7449,
                "matched_fragments": 210,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001700895.1",
                "gtdb_species": "s__Buchnera aphidicola_D",
                "ani": 85.2653,
                "matched_fragments": 188,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005083565.1",
                "gtdb_species": "s__Buchnera aphidicola_AH",
                "ani": 83.9392,
                "matched_fragments": 190,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005081945.1",
                "gtdb_species": "s__Buchnera aphidicola_AN",
                "ani": 83.5503,
                "matched_fragments": 206,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005237295.1",
                "gtdb_species": "s__Buchnera aphidicola_AP",
                "ani": 83.4608,
                "matched_fragments": 202,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005081705.1",
                "gtdb_species": "s__Buchnera aphidicola_Y",
                "ani": 83.161,
                "matched_fragments": 199,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000225445.1",
                "gtdb_species": "s__Buchnera aphidicola_A",
                "ani": 83.1436,
                "matched_fragments": 191,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000521565.1",
                "gtdb_species": "s__Buchnera aphidicola_C",
                "ani": 83.1307,
                "matched_fragments": 195,
                "total_fragments": 216,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.477,
        "cell_length": null,
        "doubling_h": 1.549,
        "growth_tmp": 24.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 601699.243,
        "gc_content": 25.469,
        "coding_genes": 517.549,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 30.485,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae_A",
        "g__Buchnera",
        "s__Buchnera aphidicola_AK"
    ],
    "_genome_taxon": [
        "Buchnera",
        "aphidicola",
        "(Brevicoryne",
        "brassicae)",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae_A",
        "g__Buchnera",
        "s__Buchnera aphidicola_AK",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "A",
        "Buchnera",
        "Buchnera",
        "aphidicola",
        "AK"
    ],
    "_meo": [
        {
            "id": "MEO_0000058",
            "label": "insecta associated"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}