{ "type": "genome", "identifier": "GCA_026706505.1", "organism": "Gemmatimonadota bacterium", "title": "Gemmatimonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026706505.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855176", "wgs_master": "JAPOYQ000000000.1", "refseq_category": "na", "taxid": "2026742", "species_taxid": "2026742", "organism_name": "Gemmatimonadota bacterium", "infraspecific_name": "", "isolate": "COS4_bin_38", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2670650v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/706/505/GCA_026706505.1_ASM2670650v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadota bacterium" ], "sample_taxid": [ "2026742" ], "sample_host_organism": [ "Coscinoderma mathewsi" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "1.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.55, "contamination": 4.63, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5938124", "Number of Sequences": "965", "Longest Sequences (bp)": "38981", "N50 (bp)": "7493", "Gap Ratio (%)": "0.063606", "GCcontent (%)": "59.5", "Number of CDSs": "4284", "Average Protein Length": "334.2", "Coding Ratio (%)": "72.3", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes deccanensis", "strain": "strain=NBRC 13994", "accession": "GCA_016862115.1", "taxid": 113561, "species_taxid": 113561, "relation_to_type": "type", "validated": true, "ani": 74.5368, "matched_fragments": 50, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.55, "contamination": 4.63, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009841115.1", "gtdb_species": "s__GCA-2724215 sp009841115", "ani": 91.2981, "matched_fragments": 1147, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009840005.1", "gtdb_species": "s__GCA-2724215 sp009840005", "ani": 90.9033, "matched_fragments": 1157, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009845645.1", "gtdb_species": "s__GCA-2724215 sp009845645", "ani": 90.7636, "matched_fragments": 776, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007571365.1", "gtdb_species": "s__GCA-2724215 sp007571365", "ani": 86.7089, "matched_fragments": 951, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002724215.1", "gtdb_species": "s__GCA-2724215 sp002724215", "ani": 77.5372, "matched_fragments": 365, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018672475.1", "gtdb_species": "s__GCA-2724215 sp018672475", "ani": 77.0764, "matched_fragments": 262, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_015660315.1", "gtdb_species": "s__GCA-2724215 sp015660315", "ani": 76.8252, "matched_fragments": 211, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__GCA-2724215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016867395.1", "gtdb_species": "s__SICG01 sp016867395", "ani": 76.226, "matched_fragments": 101, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__SICG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002726335.1", "gtdb_species": "s__UBA8231 sp002726335", "ani": 75.5831, "matched_fragments": 63, "total_fragments": 1463, "gtdb_taxonomy": "d__Bacteria;p__Latescibacterota;c__UBA2968;o__UBA8231;f__UBA8231;g__UBA8231", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Latescibacterota", "c__UBA2968", "o__UBA8231", "f__UBA8231", "g__GCA-2724215", "s__GCA-2724215 sp026706505" ], "_genome_taxon": [ "Gemmatimonadota", "bacterium", "d__Bacteria", "p__Latescibacterota", "c__UBA2968", "o__UBA8231", "f__UBA8231", "g__GCA-2724215", "s__GCA-2724215 sp026706505", "Bacteria", "Latescibacterota", "UBA2968", "UBA8231", "UBA8231", "GCA-2724215", "GCA-2724215", "sp026706505" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" }, { "id": "MEO_0000023", "label": "sea" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }