{ "type": "genome", "identifier": "GCA_026708185.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026708185.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855087", "wgs_master": "JAPOVK000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "COS1_bin_18", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2670818v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/708/185/GCA_026708185.1_ASM2670818v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [ "Coscinoderma mathewsi" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "1.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5132981", "Number of Sequences": "65", "Longest Sequences (bp)": "394707", "N50 (bp)": "136599", "Gap Ratio (%)": "0.000877", "GCcontent (%)": "66.3", "Number of CDSs": "4488", "Average Protein Length": "345.9", "Coding Ratio (%)": "90.7", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 76.3344, "matched_fragments": 83, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 76.3295, "matched_fragments": 76, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 76.2938, "matched_fragments": 104, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.2237, "matched_fragments": 101, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 76.1965, "matched_fragments": 108, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas borealis", "strain": "strain=ATF 5.2", "accession": "GCA_004798905.1", "taxid": 2508710, "species_taxid": 2508710, "relation_to_type": "type", "validated": true, "ani": 76.0775, "matched_fragments": 73, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 76.0742, "matched_fragments": 93, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 76.0565, "matched_fragments": 108, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 76.0307, "matched_fragments": 69, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 76.0111, "matched_fragments": 124, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 75.966, "matched_fragments": 91, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 75.951, "matched_fragments": 106, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 75.8241, "matched_fragments": 89, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 75.8185, "matched_fragments": 77, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 75.8141, "matched_fragments": 95, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 75.7849, "matched_fragments": 67, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=NBRC 103045", "accession": "GCA_002091635.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 75.7103, "matched_fragments": 83, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=JCM 21544", "accession": "GCA_900100285.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 75.709, "matched_fragments": 83, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 75.6223, "matched_fragments": 101, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=CGMCC 1.7053", "accession": "GCA_900115705.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 75.5594, "matched_fragments": 76, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera halophila", "strain": "strain=YIM 95161", "accession": "GCA_003732545.1", "taxid": 1304158, "species_taxid": 1304158, "relation_to_type": "type", "validated": true, "ani": 75.5498, "matched_fragments": 77, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.5421, "matched_fragments": 121, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.5368, "matched_fragments": 137, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.5222, "matched_fragments": 123, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 75.4132, "matched_fragments": 104, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=ATCC 33617", "accession": "GCA_000960995.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 75.1456, "matched_fragments": 121, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=LMG 2196", "accession": "GCA_902832765.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 75.1334, "matched_fragments": 123, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 75.019, "matched_fragments": 82, "total_fragments": 1682, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009846005.1", "gtdb_species": "s__VXYL01 sp009846005", "ani": 78.1947, "matched_fragments": 526, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__VXYL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009839505.1", "gtdb_species": "s__VXYL01 sp009839505", "ani": 78.1203, "matched_fragments": 504, "total_fragments": 1682, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__VXYL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002549795.1", "gtdb_species": "s__Halomonas beimenensis", "ani": 76.6226, "matched_fragments": 91, "total_fragments": 1682, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002480525.1", "gtdb_species": "s__UBA7803 sp002480525", "ani": 76.4697, "matched_fragments": 201, "total_fragments": 1682, "gtdb_taxonomy": 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