{ "type": "genome", "identifier": "GCA_026708635.1", "organism": "Rhodobacter sp.", "title": "Rhodobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026708635.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855064", "wgs_master": "JAPOUP000000000.1", "refseq_category": "na", "taxid": "1062", "species_taxid": "1062", "organism_name": "Rhodobacter sp.", "infraspecific_name": "", "isolate": "CAR4_bin_8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2670863v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/708/635/GCA_026708635.1_ASM2670863v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodobacter sp." ], "sample_taxid": [ "1062" ], "sample_host_organism": [ "Carteriospongia foliascens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "1.005 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3524946", "Number of Sequences": "337", "Longest Sequences (bp)": "46897", "N50 (bp)": "14595", "Gap Ratio (%)": "0.341963", "GCcontent (%)": "61.6", "Number of CDSs": "3143", "Average Protein Length": "299.8", "Coding Ratio (%)": "80.2", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salibaculum griseiflavum", "strain": "strain=WDS4C29", "accession": "GCA_003129565.1", "taxid": 1914409, "species_taxid": 1914409, "relation_to_type": "type", "validated": true, "ani": 76.4776, "matched_fragments": 77, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 76.3686, "matched_fragments": 86, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 76.3109, "matched_fragments": 104, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 76.1852, "matched_fragments": 99, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 76.1744, "matched_fragments": 94, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 76.1136, "matched_fragments": 70, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 76.0772, "matched_fragments": 95, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0499, "matched_fragments": 92, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 76.0366, "matched_fragments": 76, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 75.9936, "matched_fragments": 95, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=DSM 413", "accession": "GCA_900100045.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 75.9176, "matched_fragments": 85, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanomicrobium pacificus", "strain": "strain=KN286", "accession": "GCA_009833495.1", "taxid": 2692916, "species_taxid": 2692916, "relation_to_type": "type", "validated": true, "ani": 75.9008, "matched_fragments": 66, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=NBRC 102528", "accession": "GCA_007989485.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 75.8981, "matched_fragments": 84, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas donghaensis", "strain": "strain=DSM 17890", "accession": "GCA_900106695.1", "taxid": 356660, "species_taxid": 356660, "relation_to_type": "type", "validated": true, "ani": 75.8976, "matched_fragments": 54, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 75.8952, "matched_fragments": 94, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=CGMCC 1.6105", "accession": "GCA_014645075.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 75.894, "matched_fragments": 95, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 75.8893, "matched_fragments": 93, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax jejudonensis", "strain": "strain=CECT 8625", "accession": "GCA_900172265.1", "taxid": 1529041, "species_taxid": 1529041, "relation_to_type": "type", "validated": true, "ani": 75.8817, "matched_fragments": 91, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_003633525.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 75.8796, "matched_fragments": 84, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 75.7818, "matched_fragments": 76, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 75.6974, "matched_fragments": 85, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus macauensis", "strain": "strain=DSM 101730", "accession": "GCA_014201905.1", "taxid": 57001, "species_taxid": 57001, "relation_to_type": "type", "validated": true, "ani": 75.6796, "matched_fragments": 54, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviimonas aquaemixtae", "strain": "strain=CECT 8626", "accession": "GCA_900302475.1", "taxid": 1542388, "species_taxid": 1542388, "relation_to_type": "type", "validated": true, "ani": 75.6374, "matched_fragments": 77, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 75.5593, "matched_fragments": 79, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 75.559, "matched_fragments": 77, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003129565.1", "gtdb_species": "s__Salibaculum griseiflavum", "ani": 76.4776, "matched_fragments": 77, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019061145.1", "gtdb_species": "s__ASV31 sp019061145", "ani": 76.3943, "matched_fragments": 85, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ASV31", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365965.1", "gtdb_species": "s__Rhodovulum visakhapatnamense", "ani": 76.3686, "matched_fragments": 86, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_009363255.1", "gtdb_species": "s__Roseivivax sp009363255", "ani": 76.362, "matched_fragments": 72, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004343075.1", "gtdb_species": "s__Rhodovulum marinum", "ani": 76.3273, "matched_fragments": 103, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002701395.1", "gtdb_species": "s__Rhodobacter_B sp002701395", "ani": 76.2838, "matched_fragments": 114, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002786325.1", "gtdb_species": "s__Pseudooceanicola_C lipolyticus", "ani": 76.2621, "matched_fragments": 93, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009649175.1", "gtdb_species": "s__Rhodovulum strictum", "ani": 76.192, "matched_fragments": 93, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004342445.1", "gtdb_species": "s__Rhodovulum euryhalinum", "ani": 76.1852, "matched_fragments": 99, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016938875.1", "gtdb_species": "s__Rhodovulum sp016938875", "ani": 76.1702, "matched_fragments": 65, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002869745.1", "gtdb_species": "s__Oceaniglobus roseus", "ani": 76.1396, "matched_fragments": 106, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceaniglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017792445.1", "gtdb_species": "s__Rhodobacter_B sp017792445", "ani": 76.1245, "matched_fragments": 104, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429365.1", "gtdb_species": "s__Pseudodonghicola xiamenensis", "ani": 76.0366, "matched_fragments": 76, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudodonghicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003344785.1", "gtdb_species": "s__Puniceibacterium profundi", "ani": 76.0255, "matched_fragments": 90, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Puniceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002751875.1", "gtdb_species": "s__Oceaniglobus indicus", "ani": 75.9797, "matched_fragments": 68, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceaniglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012395815.1", "gtdb_species": "s__Roseicyclus sp012395815", "ani": 75.9735, "matched_fragments": 104, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseicyclus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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