{ "type": "genome", "identifier": "GCA_026709135.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026709135.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855035", "wgs_master": "JAPOTO000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "CAR3_bin_2", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2670913v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/709/135/GCA_026709135.1_ASM2670913v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [ "Carteriospongia foliascens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "0.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2787711", "Number of Sequences": "253", "Longest Sequences (bp)": "51734", "N50 (bp)": "15752", "Gap Ratio (%)": "0.475946", "GCcontent (%)": "64.0", "Number of CDSs": "2204", "Average Protein Length": "345.7", "Coding Ratio (%)": "82.0", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 76.8336, "matched_fragments": 78, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.6905, "matched_fragments": 104, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 76.582, "matched_fragments": 107, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 76.4458, "matched_fragments": 120, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 76.3595, "matched_fragments": 87, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 76.3499, "matched_fragments": 97, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 76.309, "matched_fragments": 84, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.3054, "matched_fragments": 87, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.2995, "matched_fragments": 120, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, "species_taxid": 168379, "relation_to_type": "type", "validated": true, "ani": 76.2966, "matched_fragments": 68, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 76.2866, "matched_fragments": 88, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, "species_taxid": 319939, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2031, "matched_fragments": 108, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 76.1769, "matched_fragments": 104, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_019823065.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 76.0891, "matched_fragments": 80, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 76.0833, "matched_fragments": 77, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 76.063, "matched_fragments": 94, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_000621225.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 76.0607, "matched_fragments": 80, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas daejeonensis", "strain": "strain=DSM 17801", "accession": "GCA_010093205.1", "taxid": 266062, "species_taxid": 266062, "relation_to_type": "type", "validated": true, "ani": 75.9378, "matched_fragments": 58, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 75.9361, "matched_fragments": 93, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas jiangsuensis", "strain": "strain=DSM 22398", "accession": "GCA_010093185.1", "taxid": 619688, "species_taxid": 619688, "relation_to_type": "type", "validated": true, "ani": 75.8765, "matched_fragments": 83, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax xenomutans", "strain": "strain=JC109", "accession": "GCA_900217905.1", "taxid": 1094342, "species_taxid": 1094342, "relation_to_type": "type", "validated": true, "ani": 75.8592, "matched_fragments": 51, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 75.8142, "matched_fragments": 100, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7999, "matched_fragments": 81, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 75.7678, "matched_fragments": 52, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.763, "matched_fragments": 92, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 75.7133, "matched_fragments": 80, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernicola", "strain": "strain=K1S02-6", "accession": "GCA_003596405.1", "taxid": 2320866, "species_taxid": 2320866, "relation_to_type": "type", "validated": true, "ani": 75.6989, "matched_fragments": 52, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 75.5893, "matched_fragments": 50, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 75.5885, "matched_fragments": 63, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 75.5709, "matched_fragments": 64, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas typographi", "strain": "strain=CA3A", "accession": "GCA_014694385.1", "taxid": 2715964, "species_taxid": 2715964, "relation_to_type": "type", "validated": true, "ani": 75.5514, "matched_fragments": 67, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009844085.1", "gtdb_species": "s__UBA9145 sp009844085", "ani": 80.0685, "matched_fragments": 502, "total_fragments": 799, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__UBA9145", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_007571115.1", "gtdb_species": "s__UBA9145 sp007571115", "ani": 78.724, "matched_fragments": 246, "total_fragments": 799, "gtdb_taxonomy": 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