{ "type": "genome", "identifier": "GCA_026710375.1", "organism": "Cyanobacteria bacterium MAG CAR1_bin_15", "title": "Cyanobacteria bacterium MAG CAR1_bin_15", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026710375.1", "bioproject": "PRJNA602572", "biosample": "SAMN15854973", "wgs_master": "JAPORF000000000.1", "refseq_category": "na", "taxid": "2775589", "species_taxid": "2775589", "organism_name": "Cyanobacteria bacterium MAG CAR1_bin_15", "infraspecific_name": "", "isolate": "CAR1_bin_15", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2671037v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/710/375/GCA_026710375.1_ASM2671037v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyanobacteria bacterium MAG CAR1_bin_15" ], "sample_taxid": [ "2775589" ], "sample_host_organism": [ "Carteriospongia foliascens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2276064", "Number of Sequences": "85", "Longest Sequences (bp)": "108705", "N50 (bp)": "46050", "Gap Ratio (%)": "0.000879", "GCcontent (%)": "61.8", "Number of CDSs": "2093", "Average Protein Length": "301.2", "Coding Ratio (%)": "83.1", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000586015.1", "gtdb_species": "s__Synechococcus_B spongiarum_F", "ani": 91.4678, "matched_fragments": 363, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.72", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009836025.1", "gtdb_species": "s__Synechococcus_B sp009836025", "ani": 89.452, "matched_fragments": 488, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_009840445.1", "gtdb_species": "s__Synechococcus_B sp009840445", "ani": 85.7918, "matched_fragments": 513, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" 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"s__Synechococcus_B spongiarum_E", "ani": 84.4416, "matched_fragments": 377, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014280235.1", "gtdb_species": "s__NIES-981 sp014280235", "ani": 76.9596, "matched_fragments": 133, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__NIES-981", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903917565.1", "gtdb_species": "s__Cyanobium sp903917565", "ani": 76.7599, 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null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Synechococcus_B", "s__Synechococcus_B sp026709085" ], "_genome_taxon": [ "Cyanobacteria", "bacterium", "MAG", "CAR1_bin_15", "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Synechococcus_B", "s__Synechococcus_B sp026709085", "Bacteria", "Cyanobacteriota", "Cyanobacteriia", "PCC-6307", "Cyanobiaceae", "Synechococcus", "B", "Synechococcus", "B", "sp026709085" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" }, { "id": "MEO_0000023", "label": "sea" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }