{ "type": "genome", "identifier": "GCA_026710565.1", "organism": "Spirochaetaceae bacterium", "title": "Spirochaetaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026710565.1", "bioproject": "PRJNA602572", "biosample": "SAMN15854962", "wgs_master": "JAPOQV000000000.1", "refseq_category": "na", "taxid": "1898206", "species_taxid": "1898206", "organism_name": "Spirochaetaceae bacterium", "infraspecific_name": "", "isolate": "APA_bin_94", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2671056v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/710/565/GCA_026710565.1_ASM2671056v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirochaetaceae bacterium" ], "sample_taxid": [ "1898206" ], "sample_host_organism": [ "Aplysina aerophoba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Slovenia: Piran, Adriatic Sea, Gulf of Piran" ], "sample_host_location_id": [], "data_size": "1.729 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6270194", "Number of Sequences": "679", "Longest Sequences (bp)": "101106", "N50 (bp)": "17118", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "5296", "Average Protein Length": "311.8", "Coding Ratio (%)": "79.0", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 75.1324, "matched_fragments": 79, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kytococcus aerolatus", "strain": "strain=DSM 22179", "accession": "GCA_900187395.1", "taxid": 592308, "species_taxid": 592308, "relation_to_type": "type", "validated": true, "ani": 75.0555, "matched_fragments": 55, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ginsengisoli", "strain": "strain=DSM 18659", "accession": "GCA_000956535.1", "taxid": 400772, "species_taxid": 400772, "relation_to_type": "type", "validated": true, "ani": 75.0211, "matched_fragments": 52, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 75.021, "matched_fragments": 142, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribius pelagius", "strain": "strain=DSM 26893", "accession": "GCA_900110115.1", "taxid": 387096, "species_taxid": 387096, "relation_to_type": "type", "validated": true, "ani": 75.0074, "matched_fragments": 62, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tomitella gaofuii", "strain": "strain=HY172", "accession": "GCA_023162085.1", "taxid": 2760083, "species_taxid": 2760083, "relation_to_type": "type", "validated": true, "ani": 74.9811, "matched_fragments": 94, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tomitella gaofuii", "strain": "strain=HY172", "accession": "GCA_014126825.1", "taxid": 2760083, "species_taxid": 2760083, "relation_to_type": "type", "validated": true, "ani": 74.9774, "matched_fragments": 94, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 74.9564, "matched_fragments": 97, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter metallidurans", "strain": "strain=CGMCC 1.12214", "accession": "GCA_014636935.1", "taxid": 340221, 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"status": "below_threshold" }, { "organism_name": "Geodermatophilus chilensis", "strain": "strain=B12", "accession": "GCA_002802985.1", "taxid": 2035835, "species_taxid": 2035835, "relation_to_type": "type", "validated": true, "ani": 74.8274, "matched_fragments": 157, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus siccatus", "strain": "strain=DSM 45419", "accession": "GCA_900103785.1", "taxid": 1137991, "species_taxid": 1137991, "relation_to_type": "type", "validated": true, "ani": 74.7605, "matched_fragments": 165, "total_fragments": 1738, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002238925.1", "gtdb_species": "s__Bin103 sp002238925", "ani": 78.2365, "matched_fragments": 418, "total_fragments": 1738, "gtdb_taxonomy": 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