{ "type": "genome", "identifier": "GCA_026712965.1", "organism": "Rhodospirillaceae bacterium", "title": "Rhodospirillaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026712965.1", "bioproject": "PRJNA602572", "biosample": "SAMN15854921", "wgs_master": "JAPOPI000000000.1", "refseq_category": "na", "taxid": "1898112", "species_taxid": "1898112", "organism_name": "Rhodospirillaceae bacterium", "infraspecific_name": "", "isolate": "APA_bin_55", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/06", "asm_name": "ASM2671296v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/712/965/GCA_026712965.1_ASM2671296v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-06", "dateModified": "2022-12-06", "datePublished": "2022-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillaceae bacterium" ], "sample_taxid": [ "1898112" ], "sample_host_organism": [ "Aplysina aerophoba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Slovenia: Piran, Adriatic Sea, Gulf of Piran" ], "sample_host_location_id": [], "data_size": "1.230 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.95, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4338692", "Number of Sequences": "573", "Longest Sequences (bp)": "86674", "N50 (bp)": "11146", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "3690", "Average Protein Length": "290.5", "Coding Ratio (%)": "74.1", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Minwuia thermotolerans", "strain": "strain=SY3-15", "accession": "GCA_002924445.1", "taxid": 2056226, "species_taxid": 2056226, "relation_to_type": "type", "validated": true, "ani": 75.7424, "matched_fragments": 72, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 75.6552, "matched_fragments": 52, 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"status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.1963, "matched_fragments": 65, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.1142, "matched_fragments": 75, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.95, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009839325.1", "gtdb_species": "s__VXPW01 sp009839325", "ani": 78.0656, "matched_fragments": 52, "total_fragments": 1152, "gtdb_taxonomy": 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