{ "type": "genome", "identifier": "GCA_026786305.1", "organism": "Cryobacterium sp.", "title": "Cryobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Colorado at Boulder", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026786305.1", "bioproject": "PRJNA764737", "biosample": "SAMN22183890", "wgs_master": "JAJAYI000000000.1", "refseq_category": "na", "taxid": "1926290", "species_taxid": "1926290", "organism_name": "Cryobacterium sp.", "infraspecific_name": "", "isolate": "CAN_BIN06", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/09", "asm_name": "ASM2678630v1", "submitter": "University of Colorado at Boulder", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/786/305/GCA_026786305.1_ASM2678630v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-09", "dateModified": "2022-12-09", "datePublished": "2022-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryobacterium sp." ], "sample_taxid": [ "1926290" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Taylor Valley, Canada Glacier" ], "sample_host_location_id": [], "data_size": "0.854 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3060307", "Number of Sequences": "109", "Longest Sequences (bp)": "134114", "N50 (bp)": "48856", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "2795", "Average Protein Length": "317.5", "Coding Ratio (%)": "87.0", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryobacterium flavum", "strain": "strain=Hh8", "accession": "GCA_004402625.1", "taxid": 1424659, "species_taxid": 1424659, "relation_to_type": "type", "validated": true, "ani": 86.1626, "matched_fragments": 734, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium flavum", "strain": "strain=CGMCC 1.11215", "accession": "GCA_900103805.1", "taxid": 1424659, "species_taxid": 1424659, "relation_to_type": "type", "validated": true, "ani": 86.0933, "matched_fragments": 741, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium ruanii", "strain": "strain=Sr36", "accession": "GCA_004404055.1", "taxid": 1259197, "species_taxid": 1259197, "relation_to_type": "type", "validated": true, "ani": 85.8913, "matched_fragments": 707, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium luteum", "strain": "strain=CGMCC 1.11210", "accession": "GCA_900110125.1", "taxid": 1424661, "species_taxid": 1424661, "relation_to_type": "type", "validated": true, "ani": 85.8845, "matched_fragments": 717, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium luteum", "strain": "strain=Hh15", "accession": "GCA_004402515.1", "taxid": 1424661, "species_taxid": 1424661, "relation_to_type": "type", "validated": true, "ani": 85.8372, "matched_fragments": 721, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium aureum", "strain": "strain=Hh31", "accession": "GCA_002954245.1", "taxid": 995037, "species_taxid": 995037, "relation_to_type": "type", "validated": true, "ani": 85.6617, "matched_fragments": 726, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium levicorallinum", "strain": "strain=GMCC 1.11211", "accession": "GCA_900113585.1", "taxid": 995038, "species_taxid": 995038, "relation_to_type": "type", "validated": true, "ani": 84.8999, "matched_fragments": 707, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium levicorallinum", "strain": "strain=NBRC 107883", "accession": "GCA_007992355.1", "taxid": 995038, "species_taxid": 995038, "relation_to_type": "type", "validated": true, "ani": 84.8511, "matched_fragments": 703, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium levicorallinum", "strain": "strain=Hh34", "accession": "GCA_004402405.1", "taxid": 995038, "species_taxid": 995038, "relation_to_type": "type", "validated": true, "ani": 84.7623, "matched_fragments": 712, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium arcticum", "strain": "strain=SK-1", "accession": "GCA_003185895.1", "taxid": 670052, "species_taxid": 670052, "relation_to_type": "type", "validated": true, "ani": 79.7351, "matched_fragments": 453, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 77.598, "matched_fragments": 296, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 77.3966, "matched_fragments": 286, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 77.309, "matched_fragments": 256, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.12, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015751745.1", "gtdb_species": "s__Cryobacterium sp015751745", "ani": 99.797, "matched_fragments": 928, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004402535.1", "gtdb_species": "s__Cryobacterium sp004402535", "ani": 86.6312, "matched_fragments": 722, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103805.1", "gtdb_species": "s__Cryobacterium flavum", "ani": 86.1279, "matched_fragments": 738, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_004403985.1", "gtdb_species": "s__Cryobacterium sp004403985", "ani": 86.0499, "matched_fragments": 719, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004404055.1", "gtdb_species": "s__Cryobacterium ruanii", "ani": 85.8913, "matched_fragments": 707, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110125.1", "gtdb_species": "s__Cryobacterium luteum", "ani": 85.8721, "matched_fragments": 718, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002954245.1", "gtdb_species": "s__Cryobacterium aureum", "ani": 85.6617, "matched_fragments": 726, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004403185.1", "gtdb_species": "s__Cryobacterium sp004403185", "ani": 85.3445, "matched_fragments": 701, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929495.1", "gtdb_species": "s__Cryobacterium sp002929495", "ani": 84.8774, "matched_fragments": 688, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002929825.1", "gtdb_species": "s__Cryobacterium sp002929825", "ani": 84.8127, "matched_fragments": 705, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.15", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004402405.1", "gtdb_species": "s__Cryobacterium levicorallinum", "ani": 84.7626, "matched_fragments": 712, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.78", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002929505.1", "gtdb_species": "s__Cryobacterium sp002929505", "ani": 84.535, "matched_fragments": 691, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.309, "cell_length": 0.078, "doubling_h": null, "growth_tmp": 15.5, "optimum_tmp": 19.125, "optimum_ph": 7.25, "genome_size": 3930741.888, "gc_content": 66.834, "coding_genes": 3934.0, "rRNA16S_genes": 3.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Cryobacterium", "s__Cryobacterium sp026786305" ], "_genome_taxon": [ "Cryobacterium", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Cryobacterium", "s__Cryobacterium sp026786305", "Bacteria", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Microbacteriaceae", "Cryobacterium", "Cryobacterium", "sp026786305" ], "_meo": [ { "id": "MEO_0000170", "label": "glacier" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }